SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116062

Length: 492 nt

UniGene Fasta

>sp_v3.0_unigene116062
AAAAGAATTTGATCTATCCTGTGATTTTATTGCATTAGGATAAGTAGTAACAATGGCAGGAAAGGAGGCGGAGGAAGTTGTAGCGTCGTCCTGTTCAGGGTCCGGAGGAGGGGCGGAGCAGGGGCTGATGTCCGGCCGCACAGAGGATCAGAAGGCCGTGGCGAGGGGTGGGGAAATGGCGGCGGAGGAGCCGCGGGAAGGAGGGGGCCAAGAATCGGTGGTGGTGGAGCGGCGGGGCGACTGTGCGGCGGTATGCCGGTGGACGATTGCTCAGTTTGGGAAGGTTAAGGCGAAGGCGATATGGAGCAGGTATTTCGAGGTTGGGGGCTATGACTGCAGGTTGCTGGTGTATCCCCGTGGCGATACTCAGGCTCTCCGGGGTTATCTGTCCATCTATTTGCAGGTCATGGATCCCCGGGCTTCCAAGTGGGATTGCTTTGCCAGCTATCGGCTGTGTGTAACGAACCAGCGCGATGAGGCGAAGTCGATACA

Ace file of the UniGene sp_v3.0_unigene116062

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TRAF-like protein [Arabidopsis thaliana] dbj\|BAF03523.1\| CGS1 mRNA stability 1 [Arabidopsis thaliana] gb\|AEC07688.1\| TRAF-like protein [Arabidopsis thaliana]	-	-	6.0e-34	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%

Source	Gene names
Sma3	At2g25320; At2g25330; CMS1; GSVIVT00032679001; OsI_08052; OsJ_07511; PHYPADRAFT_188453; POPTRDRAFT_561919; POPTRDRAFT_578230; POPTRDRAFT_642651; RCOM_0923460;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	MATH	IPR002083	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	TRAF-type	IPR013322	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25320.1	TRAF-like family protein chr2:10781951-10788065 REVERSE LENGTH=1673	6.0e-40	59%
RefSeq	Arabidopsis thaliana	NP_180104.3	TRAF-like protein [Arabidopsis thaliana]	8.0e-40	59%
RefSeq	Populus trichocarpa	XP_002324305.1	predicted protein [Populus trichocarpa]	3.00004e-41	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSM8

Fln msg: STOP codon was not found. Distance to subject end: 9 aas,

Fln protein: MAGKEAEEVVASSCSGSGGGAEQGLMSGRTEDQKAVARGGEMAAEEPREGGGQESVVVERRGDCAAVCRWTIAQFGKVKAKAIWSRYFEVGGYDCRLLVYPRGDTQALRGYLSIYLQVMDPRASKWDCFASYRLCVTNQRDEAKSI

Protein Length: 147

Fln nts: AAAAGAATTTGATCTATCCTGTGATTTTATTGCATTAGGATAAGTAGTAACA_-_ATGGCAGGAAAGGAGGCGGAGGAAGTTGTAGCGTCGTCCTGTTCAGGGTCCGGAGGAGGGGCGGAGCAGGGGCTGATGTCCGGCCGCACAGAGGATCAGAAGGCCGTGGCGAGGGGTGGGGAAATGGCGGCGGAGGAGCCGCGGGAAGGAGGGGGCCAAGAATCGGTGGTGGTGGAGCGGCGGGGCGACTGTGCGGCGGTATGCCGGTGGACGATTGCTCAGTTTGGGAAGGTTAAGGCGAAGGCGATATGGAGCAGGTATTTCGAGGTTGGGGGCTATGACTGCAGGTTGCTGGTGTATCCCCGTGGCGATACTCAGGCTCTCCGGGGTTATCTGTCCATCTATTTGCAGGTCATGGATCCCCGGGCTTCCAAGTGGGATTGCTTTGCCAGCTATCGGCTGTGTGTAACGAACCAGCGCGATGAGGCGAAGTCGATACA

Fln Alignment:

AllPine_a_c50852___CRWTIAQFGKVKAKAIWSRYFEVGGYDCRLLVYPRGDTQALRGYLSIYLQVMDPRASKWDC--FASYRLCVTNQRDEAKSI
A9NSM8________________CAWAIEHFSSLDAERHYSDIFTVGGHKWRLLIFPKGNNV---DYLSIYLDVPDSATLPHGCSKYAEFSLAVVNLTDPQLTI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain