SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene115653

Length: 215 nt

UniGene Fasta

>sp_v3.0_unigene115653
CCATGTGGGCAGTATTGGTCACAGAAGGACGCAGGAAGGTCAAGTTGCAGTATTATGCATTCAAGCTAGCACCAACTGTCAGAGAGGGTGCTTCACTTCCTGAGGTTGAACCTTACATTCCTTTCAATATCAATCCAACAGGAATGCAACCTGTCCTTACAACAACATATGTTTTGGTCTTTGCCTGGCATCTTAGCAAGCCTTCTAAAATCTCC

Ace file of the UniGene sp_v3.0_unigene115653

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SecY protein transport-like protein n=2 Tax=Arabidopsis thaliana RepID=F4IQV7_ARATH	-	-	8.0e-19	75%
FL-Next	sp=Preprotein translocase subunit SCY2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%

Source	Gene names
Sma3	At2g31530; GSVIVT00023712001; OSJNBb0092G21.12; Os05g0397700; OsI_19872; OsJ_18458; P0605G01.2; POPTRDRAFT_551187; RCOM_0558540; VITISV_011897;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	BTB/POZ	IPR013069	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G31530.1	EMB2289, SCY2 SecY protein transport family protein chr2:13427060-13430308 FORWARD LENGTH=575	1.0e-24	75%
RefSeq	Arabidopsis thaliana	NP_180711.4	secY protein transport-like protein [Arabidopsis thaliana]	2.0e-24	75%
RefSeq	Populus trichocarpa	XP_002302117.1	SecY protein [Populus trichocarpa]	1.0e-23	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: F4IQV7

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 71 - 575

Fln protein: MWAVLVTEGRRKVKLQYYAFKLAPTVREGASLPEVEPYIPFNINPTGMQPVLTTTYVLVFAWHLSKPSKIS

Protein Length: 72

Fln nts: CCATGTGGGCAGTATTGGTCACAGAAGGACGCAGGAAGGTCAAGTTGCAGTATTATGCATTCAAGCTAGCACCAACTGTCAGAGAGGGTGCTTCACTTCCTGAGGTTGAACCTTACATTCCTTTCAATATCAATCCAACAGGAATGCAACCTGTCCTTACAACAACATATGTTTTGGTCTTTGCCTGGCATCTTAGCAAGCCTTCTAAAATCTCC

Fln Alignment:

AllPine_a_c50365___MWAVLVTEGRRKVKLQYYAFKLAPTVREGASLPEVEPYIPFNINPTGMQPVLTTTYVLVF
F4IQV7________________MFAVVVTEGCRKIKLQYYGFKLASASREGSPITEVEPYIPFNINPAGMQPVLTTTYLLAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain