SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene115588

Length: 215 nt

UniGene Fasta

>sp_v3.0_unigene115588
TTATCTACCCCGGCTCCAGATGCCAAGGGCATTTATTTTCCATCTGTCTATGCACAGCGTGCTTGGAAGCAATTCACATCGTGCCTATGGAAACAGTTTTGGTCATATTGGCGAAGTCCTGGTTATAATCTAGTGCGGTTATCCTTCAGTTTTCTTACTGCATTGCTCTTTGGCACTATCTATTGGAAACAAGGACAAAAATAAATGACCAAGAA

Ace file of the UniGene sp_v3.0_unigene115588

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Pleiotropic drug resistance protein 15 emb\|CAD59563.1\| PDR-like ABC transporter [Oryza sativa Japonica Group]	-	-	2.0e-18	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	ATP-binding cassette transporter, putative	-	-	3.813e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	1.953e-09	-

Source	Gene names
Sma3	GSVIVT00034309001; GSVIVT00034319001; LOC_Os01g52560; LOC_Os06g36090; Os01g0724400; Os01g0724500; Os06g0554800; OsI_03578; OsI_23352; OsJ_03311; OsJ_21675; P0458E11.3-1; P0458E11.3-2; PDR12; PDR15; PDR8; POPTRDRAFT_705805; RCOM_1489990; RCOM_1490000; RCOM

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59870.1	PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 ABC-2 and Plant PDR ABC-type transporter family protein chr1:22034661-22039844 FORWARD LENGTH=1469	3.0e-21	53%
RefSeq	Arabidopsis thaliana	NP_176196.1	ABC transporter G family member 36 [Arabidopsis thaliana]	4.0e-21	53%
RefSeq	Populus trichocarpa	XP_002298240.1	ABC transporter family, pleiotropic drug resistance protein [Populus trichocarpa]	2.0e-23	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW55

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 227 aas, your sequence is shorter than subject: 68 - 471

Fln protein: LSTPAPDAKGIYFPSVYAQRAWKQFTSCLWKQFWSYWRSPGYNLVRLSFSFLTALLFGTIYWKQGQK*

Protein Length: 69

Fln nts: TTATCTACCCCGGCTCCAGATGCCAAGGGCATTTATTTTCCATCTGTCTATGCACAGCGTGCTTGGAAGCAATTCACATCGTGCCTATGGAAACAGTTTTGGTCATATTGGCGAAGTCCTGGTTATAATCTAGTGCGGTTATCCTTCAGTTTTCTTACTGCATTGCTCTTTGGCACTATCTATTGGAAACAAGGACAAAAATAAATGACCAAGAA

Fln Alignment:

AllPine_a_c50291___LSTPAPDAKGIYFPSVYAQRAWKQFTSCLWKQFWSYWRSPGYNLVRLSFSFLTALLFGTIYWKQGQK
A9NW55________________LCTPAPDAKDLYFPADYAQCAWKQFTTCIWKQFWAYWRSPGYNLVRLSFSFLTALLFGTIYWQQGTK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain