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UniGene Name: sp_v3.0_unigene115463
Length: 169 nt
 UniGene Fasta
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| >sp_v3.0_unigene115463
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Ace file of the UniGene sp_v3.0_unigene115463
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Cryptochrome DASH, chloroplastic/mitochondrial n=3 Tax=Arabidopsis RepID=CRYD_ARATH | - | - | 1.0e-16 | 82% |
| FL-Next | sp=Cryptochrome DASH, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 82% |
| Sma3 | Cryptochrome DASH, chloroplastic/mitochondrial | - | - | 2.481e-12 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Deoxyribodipyrimidine photo-lyase. | EC:4.1.99.3 | - | 7.44e-11 | - |
| Source | Gene names |
|---|---|
| Sma3 | At5g24850; CPF3; CRY3; CRYD; Cry3; F6A4.60; GSVIVT00032351001; LOC_Os06g45100; OSJNBa0051O02.40; OSJNBb0065C04.7; OSTLU_29275; Os06g0661800; OsI_24002; OsJ_22248; PHYPADRAFT_200971; POPTRDRAFT_785478; RCOM_0204960; RCOM_0204970; THAPSDRAFT_268988; VITISV_ |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
| Sma3 | DNA photolyase activity | GO:0003913 | Molecular Function | 0.0 | - |
| Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
| Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
| Sma3 | photoreceptor activity | GO:0009881 | Molecular Function | 0.0 | - |
| Sma3 | FMN binding | GO:0010181 | Molecular Function | 0.0 | - |
| Sma3 | DNA repair | GO:0006281 | Biological Process | 0.0 | - |
| Sma3 | protein-chromophore linkage | GO:0018298 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Cryptochrome/DNA photolyase, class 1 | IPR002081 | - | 0.0 | - |
| Sma3 | DNA photolyase, FAD-binding/Cryptochrome, C-terminal | IPR005101 | - | 0.0 | - |
| Sma3 | DNA photolyase, N-terminal | IPR006050 | - | 0.0 | - |
| Sma3 | Tetratricopeptide-like helical | IPR011990 | - | 0.0 | - |
| Sma3 | Tetratricopeptide repeat-containing domain | IPR013026 | - | 0.0 | - |
| Sma3 | Cryptochrome, DASH | IPR014133 | - | 0.0 | - |
| Sma3 | Rossmann-like alpha/beta/alpha sandwich fold | IPR014729 | - | 0.0 | - |
| Sma3 | Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal | IPR018394 | - | 0.0 | - |
| Sma3 | Tetratricopeptide repeat | IPR019734 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT5G24850.1 | CRY3 cryptochrome 3 chr5:8535399-8538016 REVERSE LENGTH=526 | 1.0e-20 | 82% |
| RefSeq | Arabidopsis thaliana | NP_568461.2 | cryptochrome DASH [Arabidopsis thaliana] | 2.0e-20 | 82% |
| RefSeq | Populus trichocarpa | XP_002330820.1 | predicted protein [Populus trichocarpa] | 2.0e-20 | 84% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q84KJ5
Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 203 aas, your sequence is shorter than subject: 46 - 569
Fln protein:
D
Protein Length:
47
Fln nts:
G
Fln Alignment:
AllPine_a_c50138___DLLRHYKETRNGMLGPDYSTKFSPWLAFGSLSPRYIHEEVKRYRK
Q84KJ5________________DLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEK
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
