SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene115326

Length: 322 nt

UniGene Fasta

>sp_v3.0_unigene115326
TTGACAAATGCAAAGTTACATAAAGAAATTGGCCATCAAGATTCACCGAGAATTTGGCAAGATATTTCTCAGATTTCAGCTCCCTCACCAGCAGGGGCCAAGCAGACACCACTGAGTCAGACTGGCTTTCGTGATCCTGCTAGCGTTGGGGCTGGCCAACAAATGACTCTTATGAGCATTGAGATCCATGCAGAATCTAGAGGAGACTTGCGGCCTGATCCTCGGTATGATGCAATCAATTTCATTGTTGTTGCGATTAAGGAAGATTCAAATGATGCAGCAGAAATTCTTGTGCTTCTCCGGGATGAAAAAGCCAATGTAT

Ace file of the UniGene sp_v3.0_unigene115326

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U238_VITVI	-	-	3.0e-24	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	71%
Sma3	DNA polymerase	-	-	1.204e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed DNA polymerase.	EC:2.7.7.7	-	2.618e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	2.618e-12	%
Sma3	Pyrimidine metabolism	00240	2.618e-12	%
Sma3	Metabolic pathways	01100	2.618e-12	%

Source	Gene names
Sma3	At1g67500; AtREV3; F12B7.5; GSVIVT00022797001; OsI_27267; OsJ_25510; RCOM_1431670; T1F15.3;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3		IPR017966	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67500.2	REV3 recovery protein 3 chr1:25287707-25296714 REVERSE LENGTH=1916	2.0e-26	60%
RefSeq	Arabidopsis thaliana	NP_176917.2	DNA polymerase zeta subunit [Arabidopsis thaliana]	2.0e-26	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HZ12

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 107 - 226

Fln protein: LTNAKLHKEIGHQDSPRIWQDISQISAPSPAGAKQTPLSQTGFRDPASVGAGQQMTLMSIEIHAESRGDLRPDPRYDAINFIVVAIKEDSNDAAEILVLLRDEKANV

Protein Length: 108

Fln nts: TTGACAAATGCAAAGTTACATAAAGAAATTGGCCATCAAGATTCACCGAGAATTTGGCAAGATATTTCTCAGATTTCAGCTCCCTCACCAGCAGGGGCCAAGCAGACACCACTGAGTCAGACTGGCTTTCGTGATCCTGCTAGCGTTGGGGCTGGCCAACAAATGACTCTTATGAGCATTGAGATCCATGCAGAATCTAGAGGAGACTTGCGGCCTGATCCTCGGTATGATGCAATCAATTTCATTGTTGTTGCGATTAAGGAAGATTCAAATGATGCAGCAGAAATTCTTGTGCTTCTCCGGGATGAAAAAGCCAATGTAT

Fln Alignment:

AllPine_a_c49984___QDISQISAPSPAGAKQTPLSQTGFRDPASVGAGQQMTLMSIEIHAESRGDLRPDPRYDAINFIVVAIKEDSNDAAEILVLLR
F6HZ12________________QDISQISGPEEK-SKPTPLSQIGFRDPASVGGGQQVTLLSIEIQAESRGDLRPDPRYDAINVIVLLIQEDDDSALEVFVLCR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain