SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene114821

Length: 428 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene114821
TGCTCCAAGCATATAGATATCAGGTACCACTTTATCCGAAATATGGTACAACGAGGAGCAATAACGCTCCATCACAATGGCACTGATGAGCAGGTCGCCGATATTCTAACAATGCCCTTAGGGAAGGTCAAGTTCTTGGCCTTCCGAGAACGACTTGGAGTTGTGGAGAGACCCTCTTGTGAGGGTCATGTATGATATGGACTTACAAGTCAGTAAGAGTGGTATGAGACACTCTCTTTATTAGGAACTGACTTTGGGTCAGTAAGAGTGCTATTAGACACTCTCTTTTATCTGGAACTGACTTCAGGTCAGTAGATCACTTCTTCTTCTTCATAGTTCAGCATAGCAGAGCAGTGCATTGATGGCAGAGATAGTACCGACAGACAGATGGATTAGCAGATGGAGTTCTCCCTAGTTGAGAGCGAGTG

Ace file of the UniGene sp_v3.0_unigene114821 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative integrase n=1 Tax=Oryza sativa Japonica Group RepID=Q75M81_ORYSJ	-	-	9.0e-10	54%
FL-Next	tr=Putative uncharacterized protein; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	62%

Source	Gene names
Sma3	CCHC;

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: H0I4D8

Fln msg: your sequence is shorter than subject: 65 - 196

Fln protein: CSKHIDIRYHFIRNMVQRGAITLHHNGTDEQVADILTMPLGKVKFLAFRERLGVVERPSCEGHV*

Protein Length: 66

Fln nts: TGCTCCAAGCATATAGATATCAGGTACCACTTTATCCGAAATATGGTACAACGAGGAGCAATAACGCTCCATCACAATGGCACTGATGAGCAGGTCGCCGATATTCTAACAATGCCCTTAGGGAAGGTCAAGTTCTTGGCCTTCCGAGAACGACTTGGAGTTGTGGAGAGACCCTCTTGTGAGGGTCATGTATGA___TATGGACTTACAAGTCAGTAAGAGTGGTATGAGACACTCTCTTTATTAGGAACTGACTTTGGGTCAGTAAGAGTGCTATTAGACACTCTCTTTTATCTGGAACTGACTTCAGGTCAGTAGATCACTTCTTCTTCTTCATAGTTCAGCATAGCAGAGCAGTGCATTGATGGCAGAGATAGTACCGACAGACAGATGGATTAGCAGATGGAGTTCTCCCTAGTTGAGAGCGAGTG

Fln Alignment:

AllPine_a_c49365___SKHIDIRYHFIRNMVQRGAITLHHNGTDEQVADILTMPLGKVKFLAFRERLGVV
H0I4D8________________SKHIDIRYHFIRDCVDRGEVDIEHVGTGDQLADILTKALGRVKFVEQRQQLGVV

SSRs (tot: 1)

Start position	End position	Sequence	Length
97	109	GAA GAA GAA GAA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain