SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene114386

Length: 452 nt

UniGene Fasta

>sp_v3.0_unigene114386
TTCCTAGGAGCAACACAGTATTGGAGAAAGTTTATTGCTAACTTTTCCTTGATTGCAACTCCCTTACATGCATTAACAGGATTGAATAAGGTGTCTCAGTGGGGAGGCAAACAGCAGAAAGCCTTTGACACCTTGAAAGAAAAGATTAGTACAACTCCAGTACTAGCACTGCCCGATTTTCAAAGACCATTTGAAATTGAAATGGATGCCAGTGACTATGCCATGGGAGCAGTGTTGATGCAACGCGGTAAACCCATATGTTATCATTCTGAGACATTTAATTCTGCAATAGTAAATTATCCCACATATGATAAAGAATTGTATGCATTAGTACATAGCGTGAAAAAGTGGAAACATTATTTAATGGGCAAAGAGATAGTTATACATACTGATCATCAACCACTTCAATATTTACACTCACAAACTAAGTTGCAGCAATCAAGACACTATAG

Ace file of the UniGene sp_v3.0_unigene114386

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSJNBa0024J22.19 protein n=2 Tax=Oryza sativa RepID=Q7XRN3_ORYSJ	-	-	2.0e-38	50%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	43%
Sma3	Putative gag-pol polyprotein	-	-	6.377e-15	-

Source	Gene names
Sma3	AT4g07850; AT4g08100; At2g06890; B1159F04.11; F5K24.1; F9M13.15; H0211A12.9; H0502G05.10; H0624F09.1; H0807C06-H0308C08.9; H0818H01.18; LOC_Os03g23220; LOC_Os03g23830; LOC_Os03g23840; LOC_Os03g23860; LOC_Os03g33328; LOC_Os03g35326; LOC_Os03g45670; LOC_Os1

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: STOP codon was not found. Distance to subject end: 60 aas,

Fln protein: FLGATQYWRKFIANFSLIATPLHALTGLNKVSQWGGKQQKAFDTLKEKISTTPVLALPDFQRPFEIEMDASDYAMGAVLMQRGKPICYHSETFNSAIVNYPTYDKELYALVHSVKKWKHYLMGKEIVIHTDHQPLQYLHSQTKLQQSRHY

Protein Length: 151

Fln nts: TTCCTAGGAGCAACACAGTATTGGAGAAAGTTTATTGCTAACTTTTCCTTGATTGCAACTCCCTTACATGCATTAACAGGATTGAATAAGGTGTCTCAGTGGGGAGGCAAACAGCAGAAAGCCTTTGACACCTTGAAAGAAAAGATTAGTACAACTCCAGTACTAGCACTGCCCGATTTTCAAAGACCATTTGAAATTGAAATGGATGCCAGTGACTATGCCATGGGAGCAGTGTTGATGCAACGCGGTAAACCCATATGTTATCATTCTGAGACATTTAATTCTGCAATAGTAAATTATCCCACATATGATAAAGAATTGTATGCATTAGTACATAGCGTGAAAAAGTGGAAACATTATTTAATGGGCAAAGAGATAGTTATACATACTGATCATCAACCACTTCAATATTTACACTCACAAACTAAGTTGCAGCAATCAAGACACTATAG

Fln Alignment:

AllPine_a_c48793___FLGATQYWRKFIANFSLIATPLHALTGLNKVSQWGGKQQKAFDTLKEKISTTPVLALPDFQRPF
P92523________________FLGLTGYYRRFVKNYGKIVRPLTELLKKNSL-KWTEMAALAFKALKGAVTTLPVLALPDLKLPF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain