SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene114071

Length: 452 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene114071
GGAACAGCAGATGAAGAAAACAGAAGCAGCACAGAGACGCAAGATGCAATTAGAGAAGGCTGAAAAAGCAGCTCAGGCTGAGGCTATCAAGAAGATTCTGGGTAAGGACCCTTCAAAGAAGAAACGAGGAGATAATAGACAGAGACAAAGGGATGCAATGGAACAGAAGAAGGCTGCTAGTGCTATGTTGCTTGCATCGAATGGCGTGAGATGGGTTATAGGACCATCTGGCACAGTTGTTACATTTTCTGAAAATATGGGGTTTCCAAGCATATTCAATAACCCATGCAGGTACCCTCCACCTCGTGAGAAATGTGCTGGGCCATCATGTAACAATACATATAAATATAGAGACTCCAGAACTAATCTCCCTCTATGCAGTCTTCAATGCTACCGTGCTATACATGATGTGTAACATTCATTTATCCTGTTTACACTCATCAGTAATGCAG

Ace file of the UniGene sp_v3.0_unigene114071 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana] dbj\|BAC42342.1\| unknown protein [Arabidopsis thaliana] gb\|AEE33398.1\| HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]	-	-	2.0e-34	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%

Source	Gene names
Sma3	At1g56460; At1g56460/F13N6_4; At2g47350; At3g06660; F13N6.4; F3E22.21; GSVIVT00022598001; GSVIVT00028124001; GSVIVT00033131001; LOC_Os03g59680; LOC_Os12g37430; OSJNBb0033J23.10; Os03g0811500; Os12g0561200; OsI_14023; OsI_38728; OsJ_13069; OsJ_36510; PHYPA

Source	GOs	Term	Type	e value	Identity
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	0.0	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	PAPA-1-like conserved region	IPR006880	-	-
Sma3	Zinc finger, HIT-type	IPR007529	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56460.2	" HIT zinc finger ;PAPA-1-like conserved region chr1:21146765-21149468 FORWARD LENGTH=532"	9.00054e-42	59%
RefSeq	Arabidopsis thaliana	NP_176041.2	HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]	9.99967e-42	59%
RefSeq	Populus trichocarpa	XP_002318948.1	predicted protein [Populus trichocarpa]	0.0	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS52

Fln msg: your sequence is shorter than subject: 138 - 407

Fln protein: EQQMKKTEAAQRRKMQLEKAEKAAQAEAIKKILGKDPSKKKRGDNRQRQRDAMEQKKAASAMLLASNGVRWVIGPSGTVVTFSENMGFPSIFNNPCRYPPPREKCAGPSCNNTYKYRDSRTNLPLCSLQCYRAIHDV*

Protein Length: 139

Fln nts: GGAACAGCAGATGAAGAAAACAGAAGCAGCACAGAGACGCAAGATGCAATTAGAGAAGGCTGAAAAAGCAGCTCAGGCTGAGGCTATCAAGAAGATTCTGGGTAAGGACCCTTCAAAGAAGAAACGAGGAGATAATAGACAGAGACAAAGGGATGCAATGGAACAGAAGAAGGCTGCTAGTGCTATGTTGCTTGCATCGAATGGCGTGAGATGGGTTATAGGACCATCTGGCACAGTTGTTACATTTTCTGAAAATATGGGGTTTCCAAGCATATTCAATAACCCATGCAGGTACCCTCCACCTCGTGAGAAATGTGCTGGGCCATCATGTAACAATACATATAAATATAGAGACTCCAGAACTAATCTCCCTCTATGCAGTCTTCAATGCTACCGTGCTATACATGATGTGTAA___CATTCATTTATCCTGTTTACACTCATCAGTAATGCAG

Fln Alignment:

AllPine_a_c48413___EQQMKKTEAAQRRKMXXXXXXXXXXXXXXXXXLGKDPSKKKRGDNRQRQRDAMEQKKAASAMLLASNGVRWVIGPSGTVVTFSENMGFPSIFNN-PCRYPPPREKCAGPSCNNTYKYRDSRTNLPLCSLQCYRAIHDV
C0PS52________________EQQLKKADAAQRRRMQAEKAAQKIQDDAIKKILGQDTLKQKREEKLRRQRDEMAQEKRDAAKTIAPNTIRWVIGPSGTVVSFSEDAEFLGIFNSVPCRYPPAREKCAGPSCNNTYKYRDSKSNLPLCSLLCYRAIHDM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
303		75		25	0.996486
316	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain