SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113915

Length: 456 nt

UniGene Fasta

>sp_v3.0_unigene113915
TACAGCGGAGGCTCGGCCCTTCGGGCCAACAGCAAATGCTGCAGAGGAAGGGGCGGAATTCGATCGAAATCTCACATATTACATAGCTAATTGCTTCGCCATCAAATTCGAGCAGACATCCAGATGGGTTCCGATGAAGATGAAATGGATTATGGAATTCGAATACTCCGATGAAGAACAAGACGACGAAGATGTTGCCATTGAAAACCAGTATTACAACTCTAAAGGTTTGGTGGAGTCCAATCCTCAAGCTGCCCTTTCTGGTTTTGCCGATGTTGTCAGGATGGAACCTGAAAAGATCAGTGGGGATTTAAGGCTCTGAAACAAACGGTTAAGCTGCATTATCGTTTGGGAAACTATAAAGAAATGATGGATGCTTACCGGGAGATGTTGACATACATTAAATCTGCTGTGACTCGAAACTTCAGTGAGAAGTGTTTAAATAATATCATCGAA

Ace file of the UniGene sp_v3.0_unigene113915

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	COP9 signalosome complex subunit 2 [Arabidopsis thaliana] sp\|Q8W207.1\|CSN2_ARATH RecName: Full=COP9 signalosome complex subunit 2; Short=Signalosome subunit 2; AltName: Full=Protein FUSCA 12 gb\|AAL58101.1\|AF395058_1 CSN complex subunit 2 [Arabidopsis thal	-	-	6.0e-37	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	COP9 signalosome complex subunit 2	-	-	2.893e-13	-

Source	Gene names
Sma3	At2g26990; CSN2; FUS12; GSVIVT00023341001; MICPUCDRAFT_70801; Os01g0279200; OsI_01398; OsJ_01306; P0003H10.3; PHYPADRAFT_133638; PHYPADRAFT_165552; PHYPADRAFT_166775; POPTRDRAFT_558178; POPTRDRAFT_583397; RCOM_1394390; T20P8.4; VITISV_042410;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	signalosome	GO:0008180	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	cullin deneddylation	GO:0010388	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	PCI/PINT associated module	IPR013143	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26990.1	FUS12, ATCSN2, COP12, CSN2 proteasome family protein chr2:11519684-11522412 REVERSE LENGTH=439	7.0e-39	79%
RefSeq	Arabidopsis thaliana	NP_565632.1	COP9 signalosome complex subunit 2 [Arabidopsis thaliana]	9.0e-39	79%
RefSeq	Populus trichocarpa	XP_002314240.1	predicted protein [Populus trichocarpa]	4.0e-39	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ67

Fln msg: Overlapping hits, possible frame ERROR between 298 and 295, Distance to subject end: 328 aas, your sequence is shorter than subject: 108 - 439

Fln protein: MKMKWIMEFEYSDEEQDDEDVAIENQYYNSKGLVESNPQAALSGFADVVRMEPxxxQWGFKALKQTVKLHYRLGNYKEMMDAYREMLTYIKSAVTRNFSEKCLNNIIE

Protein Length: 109

Fln nts: TACAGCGGAGGCTCGGCCCTTCGGGCCAACAGCAAATGCTGCAGAGGAAGGGGCGGAATTCGATCGAAATCTCACATATTACATAGCTAATTGCTTCGCCATCAAATTCGAGCAGACATCCAGATGGGTTCCG_-_ATGAAGATGAAATGGATTATGGAATTCGAATACTCCGATGAAGAACAAGACGACGAAGATGTTGCCATTGAAAACCAGTATTACAACTCTAAAGGTTTGGTGGAGTCCAATCCTCAAGCTGCCCTTTCTGGTTTTGCCGATGTTGTCAGGATGGAACCTxxxxxxxxxCAGTGGGGATTTAAGGCTCTGAAACAAACGGTTAAGCTGCATTATCGTTTGGGAAACTATAAAGAAATGATGGATGCTTACCGGGAGATGTTGACATACATTAAATCTGCTGTGACTCGAAACTTCAGTGAGAAGTGTTTAAATAATATCATCGAA

Fln Alignment:

AllPine_a_c48229___FEYSDEEQDDEDVAIENQYYNSKGLVESNPQAALSGFADVVRMEPExDQWGFKALKQTVKLHYRLGNYKEMMDAYREMLTYIKSAVTRNFSEKCLNNIIE
B8LQ67________________FEYSEEETEEQDVDIENQYYNSKGLVESDPQEALAGFAEVVKMEPExAEWGFKALKQTVKLYYRLGKYKEMMDSYRVMLTYIRSAVTRNYSEKCINNIMD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain