SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113848

Length: 529 nt

UniGene Fasta

>sp_v3.0_unigene113848
GCCATGGAGTCTGCAATATTAAAACAATTGAAGTTCAAGCTTACAATTCCCACTCCATATGTATTCCTCCTCAGGTTTCTGAAGGCAGCTGGTCCCGACAAAGTGATGGAAAATCTGGCATTCTTCTTGGTTGAACTGTGTTTGCTTCAGTACATAATGATTAAATACAGTCCATCATTGATTGCTGCTGCTGCTGTCTATACTGCTCGATGCACTTTGAGGAAGGATCCATCTTGGAATAAAACACTTACCCTTCATACAGGCTACTCTGAGTCGGACCTCGAGGAATGTGCGCATTTCATGGTTGACTTTCACCTAAATGCGGGAGTAAATAAGCTGAGAGCTGTTCATGAGAAGTATTCAGATCCAGTTTTTGGCTATGTTGCTTTTTTAATTCCTGCCAAATTACCTGTAAAGGACAGTTGCAACGCTAACAACTGATCAACATGCATGCCAAGTTACCTGTTGAAGACAGTTGCAGCGCCAACAACTGTTCAACATGCATACCAAAATTACTTCAGGCCCCTAA

Ace file of the UniGene sp_v3.0_unigene113848

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable G2/mitotic-specific cyclin (Fragment) n=1 Tax=Picea mariana RepID=O65064_PICMA	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	CycB2	-	-	2.365e-22	-

Source	Gene names
Sma3	AcCycB1; AcCycB2; At1g16330; At1g20590; At1g20610; At1g76310; At2g17620; At2g26760; At3g11520; At4g35620; At5g06150; B1085F09.20; CYC1B; CYC2; CYC2A; CYC2B; CYCB; CYCB1-1; CYCB1-2; CYCB1-3; CYCB1-4; CYCB1-5; CYCB2-1; CYCB2-2; CYCB2-3; CYCB2-4; CYCB2-5; CY

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	response to gamma radiation	GO:0010332	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16330.1	" CYCB3;1 cyclin b3;1 chr1:5582387-5587391 REVERSE LENGTH=648"	2.0e-39	50%
RefSeq	Arabidopsis thaliana	NP_173083.3	cyclin B3-1 [Arabidopsis thaliana]	2.0e-39	50%
RefSeq	Populus trichocarpa	XP_002300642.1	predicted protein [Populus trichocarpa]	5.00264e-43	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC16

Fln msg: your sequence is shorter than subject: 147 - 465

Fln protein: AMESAILKQLKFKLTIPTPYVFLLRFLKAAGPDKVMENLAFFLVELCLLQYIMIKYSPSLIAAAAVYTARCTLRKDPSWNKTLTLHTGYSESDLEECAHFMVDFHLNAGVNKLRAVHEKYSDPVFGYVAFLIPAKLPVKDSCNANN*

Protein Length: 148

Fln nts: GCCATGGAGTCTGCAATATTAAAACAATTGAAGTTCAAGCTTACAATTCCCACTCCATATGTATTCCTCCTCAGGTTTCTGAAGGCAGCTGGTCCCGACAAAGTGATGGAAAATCTGGCATTCTTCTTGGTTGAACTGTGTTTGCTTCAGTACATAATGATTAAATACAGTCCATCATTGATTGCTGCTGCTGCTGTCTATACTGCTCGATGCACTTTGAGGAAGGATCCATCTTGGAATAAAACACTTACCCTTCATACAGGCTACTCTGAGTCGGACCTCGAGGAATGTGCGCATTTCATGGTTGACTTTCACCTAAATGCGGGAGTAAATAAGCTGAGAGCTGTTCATGAGAAGTATTCAGATCCAGTTTTTGGCTATGTTGCTTTTTTAATTCCTGCCAAATTACCTGTAAAGGACAGTTGCAACGCTAACAACTGA___TCAACATGCATGCCAAGTTACCTGTTGAAGACAGTTGCAGCGCCAACAACTGTTCAACATGCATACCAAAATTACTTCAGGCCCCTAA

Fln Alignment:

AllPine_a_c48144___MESAILKQLKFKLTIPTPYVFLLRFLKAAGPDKVMENLAFFLVELCLLQYIMIKYSPSLIAAAAVYTARCTLRKDPSWNKTLTLHTGYSESDLEECAHFMVDFHLNAGVNKLRAVHEKYSDPVFGYVAFLIPAKLP
D5AC16________________MEKEMLNKLKFHLTVPTPYVFLVRFLKAAGSDEEMANLVFFLTELSLMQYVMIKFPPSMLAAAAVYTARCTLQKMPVWSHVLKAHSGYSETDLKECVKLMVAFHQSSEESKLNTVIKKYSTPEYNSVAFIKPAKLP

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
399		40		60	1.0
400	40			60	1.0
421	50		50		1.0
434	25	75			0.996473
435		33	66		0.997453
437		33		66	0.997453
443		66		33	0.997454

SSRs (tot: 1)

Start position	End position	Sequence	Length
183	196	TGC TGC TGC TGC TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain