SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113839

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene113839
GCATTGAAATTGTCGCACTTTGTACCCATGGGACGCTTGGAAGAACTTATAAAACCATTCCAAGACGTTCAAAGCACGCCATGGCAAATTCGTTTGGAAACAATTAAGGCACTGATTGATCTTGAGGCACATAAAAATGGCCTTGATGTTGCTCTCTCTTCAGCTGTGAAATTTATAATAGACGAATCATCCTTGCAAGTACAAACGAAAGCTGCTATGCATTGTC

Ace file of the UniGene sp_v3.0_unigene113839

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	48%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002321457.1	predicted protein [Populus trichocarpa]	6.0e-13	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1MUG4

Fln msg: Distance to subject end: 451 aas, your sequence is shorter than subject: 75 - 1388

Fln protein: ALKLSHFVPMGRLEELIKPFQDVQSTPWQIRLETIKALIDLEAHKNGLDVALSSAVKFIIDESSLQVQTKAAMHC

Protein Length: 76

Fln nts: GCATTGAAATTGTCGCACTTTGTACCCATGGGACGCTTGGAAGAACTTATAAAACCATTCCAAGACGTTCAAAGCACGCCATGGCAAATTCGTTTGGAAACAATTAAGGCACTGATTGATCTTGAGGCACATAAAAATGGCCTTGATGTTGCTCTCTCTTCAGCTGTGAAATTTATAATAGACGAATCATCCTTGCAAGTACAAACGAAAGCTGCTATGCATTGTC

Fln Alignment:

AllPine_a_c48133___ALKLSHFVPMGRLEELIKPFQDVQSTPWQIRLETIKALIDLEAHKNGLDVALSSAVKFIIDESSLQVQTKAAMH
I1MUG4________________ALKLSGFIPLDRVYGLVKPFRDIKAL-WQVRIEASRALLDLEFHCKGMDSALLLFIKYIEEEHSLRGQLKLATH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain