SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113700

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene113700
CCCTTATCGACATGTATGCTAAATCTGGTAGAGTGGATATTGCACGGCAGGTTTTTGATGAAATATCTAAAAAGGATATGGTGTTATGGACTGCGATGATCACGGGTTATGCCCAAAATGGGCATGCCAATGAGGCTTTGGAACTTTTCATCAAATGCAACTGTCAGATGTGAAACCCAATCAGGTCACCATTTTGAGTGTGCTACGTGCATGCGCTGACTTAGCAGCTCTGC

Ace file of the UniGene sp_v3.0_unigene113700

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAU3_RICCO	-	-	1.0e-13	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	Gene names
Sma3	GSVIVT00023425001;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G16860.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:5543834-5546386 FORWARD LENGTH=850	5.0e-14	50%
RefSeq	Arabidopsis thaliana	NP_197188.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-14	50%
RefSeq	Populus trichocarpa	XP_002314516.1	predicted protein [Populus trichocarpa]	1.0e-14	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 28 aas, your sequence is shorter than subject: 77 - 394

Fln protein: LIDMYAKSGRVDIARQVFDEISKKDMVLWTAMITGYAQNGHANEALExxxQMQLSDVKPNQVTILSVLRACADLAAL

Protein Length: 78

Fln nts: CCCTTATCGACATGTATGCTAAATCTGGTAGAGTGGATATTGCACGGCAGGTTTTTGATGAAATATCTAAAAAGGATATGGTGTTATGGACTGCGATGATCACGGGTTATGCCCAAAATGGGCATGCCAATGAGGCTTTGGAAxxxxxxxxxCAAATGCAACTGTCAGATGTGAAACCCAATCAGGTCACCATTTTGAGTGTGCTACGTGCATGCGCTGACTTAGCAGCTCTGC

Fln Alignment:

AllPine_a_c47963___LIDMYAKSGRVDIARQVFDEISKKDMVLWTAMITGYAQNGHANEALELFIKCNCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFHQMQLSDVKPNQVTILSVLRACADLAAL
B8LKN6________________LIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFQQMQLRGVKPNSITIASVLSACAAVSAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain