SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113649

Length: 353 nt

UniGene Fasta

>sp_v3.0_unigene113649
ATGGGCTGGTTTTGATGGAGAGCAGTGACGATGGTGTTGTGTGGGAGAGCTTTGAGAATCCGACGGAGACGTGGCTGCCGGGGATGAAGATCCGTTACGGACAGAGCCTGACATCGTGGAAAACGGCAACGGATCCGGCACCGGGAGATTTCAGCCTGCAACTGAGGCTACATTCTGGTACTGCTAAATTCATCGAGTTTGTGCTAGTTTGGCGGAATTCCGTGCCTTACTGGAGCAGCGGCAAGTGGGATGGCTATAGCTTTCCGTACGTTCCGGAGATGACCGTCAAATATATCTACAATTTTACGTTGTCAATCCAAATTCCTTTGACGGGTATTTACTTACACAGAATT

Ace file of the UniGene sp_v3.0_unigene113649

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like protein kinase 4 n=2 Tax=Arabidopsis RepID=F4JH44_ARATH	-	-	5.0e-22	46%
FL-Next	sp=G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G00340.1	RLK4 receptor-like protein kinase 4 chr4:148958-151496 FORWARD LENGTH=818	2.0e-27	46%
RefSeq	Arabidopsis thaliana	NP_567172.4	receptor-like protein kinase 4 [Arabidopsis thaliana]	3.0e-27	46%
RefSeq	Populus trichocarpa	XP_002320809.1	predicted protein [Populus trichocarpa]	1.0e-25	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q39203

Fln msg: Distance to subject end: 564 aas, your sequence is shorter than subject: 117 - 797

Fln protein: GLVLMESSDDGVVWESFENPTETWLPGMKIRYGQSLTSWKTATDPAPGDFSLQLRLHSGTAKFIEFVLVWRNSVPYWSSGKWDGYSFPYVPEMTVKYIYNFTLSIQIPLTGIYLHRI

Protein Length: 118

Fln nts: ATGGGCTGGTTTTGATGGAGAGCAGTGACGATGGTGTTGTGTGGGAGAGCTTTGAGAATCCGACGGAGACGTGGCTGCCGGGGATGAAGATCCGTTACGGACAGAGCCTGACATCGTGGAAAACGGCAACGGATCCGGCACCGGGAGATTTCAGCCTGCAACTGAGGCTACATTCTGGTACTGCTAAATTCATCGAGTTTGTGCTAGTTTGGCGGAATTCCGTGCCTTACTGGAGCAGCGGCAAGTGGGATGGCTATAGCTTTCCGTACGTTCCGGAGATGACCGTCAAATATATCTACAATTTTACGTTGTCAATCCAAATTCCTTTGACGGGTATTTACTTACACAGAATT

Fln Alignment:

AllPine_a_c47898___GLVLMESSDDGVVWESFENPTETWLPGMKIRYGQSLTSWKTATDPAPGDFSLQLRLHSGTAKFIEFVLVWRNSVPYWSSGKWDGYSFPYVPEMTVKYIYNF
Q39203________________GNLILINDDGSPVWQSFDNPTDTWLPGMNVTGLTAMTSWRSLFDPSPGFYSLRL-----SPSFNEFQLVYKGTTPYWSTGNWTGEAFVGVPEMTIPYIYRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain