SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113499

Length: 461 nt

UniGene Fasta

>sp_v3.0_unigene113499
CAAAACGGGCATGGAGAAGAAGCCCTGAGACTTTTTCGCCAAATGGAATCGTCGGGTTTGATACCCAATGTGACTTCGTGGAATTCAATGATATCTGGCTATGCACAGAGAGGACATGAGTATGAAGCTTTGGTACTTTTGCGAGAAATGCGAGCGACAGGGGAAAAACCCAATTTCGTAACTATGTTGTCTGTGCTTCCTGCATTTGCCAACATAGGCGCGCTGGAAAAGATTAAAGAAATCCATGGTTATATAATACATTGGTTTCGAGTCGCATGTTTCTGTGGGAAGTGCAGTTGTAGATACGTACTGTAAATGCGGGAGTGTCATGGATGCACGCCAAATGTTTGATAAAATGTTGGAAAGAGATGTGGTCTCATGGAGTTCAATGATTCAAGGGTATGCAATGCATGGTCATGCTGAAGATGCCCTTGGACTTTTAACCAATGCAAGAGGCAGGT

Ace file of the UniGene sp_v3.0_unigene113499

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LFL5.1\|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860 emb\|CAC01699.1\| putative protein [Arabidopsis thaliana] gb\|AED92350.1\| pentatricopeptide repeat-	-	-	8.0e-25	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Putative uncharacterized protein OJ1118_F06.2	-	-	6.335e-06	-

Source	Gene names
Sma3	GSVIVT00014539001; OJ1118_F06.2; Os05g0370000; OsJ_18289; POPTRDRAFT_758210;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G16860.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:5543834-5546386 FORWARD LENGTH=850	1.0e-26	48%
RefSeq	Arabidopsis thaliana	NP_197188.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-26	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 378 aas, your sequence is shorter than subject: 154 - 795

Fln protein: QNGHGEEALRLFRQMESSGLIPNVTSWNSMISGYAQRGHEYEALVLLREMRATGEKPNFVTMLSVLPAFANIGALEKIKEIHGYIxxxGFESHVSVGSAVVDTYCKCGSVMDARQMFDKMLERDVVSWSSMIQGYAMHGHAEDALGLLTNARGR

Protein Length: 155

Fln nts: CAAAACGGGCATGGAGAAGAAGCCCTGAGACTTTTTCGCCAAATGGAATCGTCGGGTTTGATACCCAATGTGACTTCGTGGAATTCAATGATATCTGGCTATGCACAGAGAGGACATGAGTATGAAGCTTTGGTACTTTTGCGAGAAATGCGAGCGACAGGGGAAAAACCCAATTTCGTAACTATGTTGTCTGTGCTTCCTGCATTTGCCAACATAGGCGCGCTGGAAAAGATTAAAGAAATCCATGGTTATATAATxxxxxxTGGTTTCGAGTCGCATGTTTCTGTGGGAAGTGCAGTTGTAGATACGTACTGTAAATGCGGGAGTGTCATGGATGCACGCCAAATGTTTGATAAAATGTTGGAAAGAGATGTGGTCTCATGGAGTTCAATGATTCAAGGGTATGCAATGCATGGTCATGCTGAAGATGCCCTTGGACTTTTAACCAATGCAAGAGGCAGGT

Fln Alignment:

AllPine_a_c47721___GHGEEALRLFRQMESSGLIPNVTSWNSMISGYAQRGHEYEALVLLREMRATGEKPNFVTMLSVLPAFANIGALEKIKEIHGYIIxxGFESHVSVGSAVVDTYCKCGSVMDARQMFDKMLERDVVSWSSMIQGYAMHGHAEDALGL
B8LQA8________________GSLENARQVFDRMPKR----DVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIxxGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain