SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113435

Length: 202 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene113435
GAATGCATTCTGAGCTATCATAGTGAGAAGCTGGCCATCGCGTTTGGGCTTATTAGCACAGCCCCCTGATAAAGTTATTCGAGTTGTCAAAAACCTACGTGTGTGCATTGACTGCCACACTGCCACAAAGTTTATCTCCAAGATTGTTGGGAGAGAAATTATCGTAAGAGATGCCAACCGTTTCCATCATTTCAAGAATGGC

Ace file of the UniGene sp_v3.0_unigene113435 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Pinus nigra RepID=B3U1V3_9CONI	-	-	4.0e-21	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At2g02980; At2g22070; At3g24000; At3g57430; At4g30700; At4g33170; At4g33990; At5g06540; B1080A02.28; DYW9; EMB2758; F14O13.19; F15M7.7; F17I5.180; F4I10.100; GSVIVT00000282001; GSVIVT00000621001; GSVIVT00002188001; GSVIVT00003060001; GSVIVT00006467001; GS

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G22070.1	pentatricopeptide (PPR) repeat-containing protein chr2:9383602-9385962 FORWARD LENGTH=786	3.0e-21	69%
RefSeq	Arabidopsis thaliana	NP_179798.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-21	69%
RefSeq	Populus trichocarpa	XP_002305120.1	predicted protein [Populus trichocarpa]	1.0e-21	73%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Overlapping hits, possible frame ERROR between 66 and 47, STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 68 - 370

Fln protein: ECILSYHSEKLAIAFxxxxxxxxDKVIRVVKNLRVCIDCHTATKFISKIVGREIIVRDANRFHHFKNG

Protein Length: 69

Fln nts: GAATGCATTCTGAGCTATCATAGTGAGAAGCTGGCCATCGCGTTTxxxxxxxxxxxxxxxxxxxxxxxxGATAAAGTTATTCGAGTTGTCAAAAACCTACGTGTGTGCATTGACTGCCACACTGCCACAAAGTTTATCTCCAAGATTGTTGGGAGAGAAATTATCGTAAGAGATGCCAACCGTTTCCATCATTTCAAGAATGGC

Fln Alignment:

AllPine_a_c47648___ECILSYHSEKLAIAFxxxxxxxDKVIRVVKNLRVCIDCHTATKFISKIVGREIIVRDANRFHHFKNG
A9P0W0________________EWILGHHSEKLAIAFxxxxxxxGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain