SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113305

Length: 540 nt

UniGene Fasta

>sp_v3.0_unigene113305
ATGGGGATTTCTGCCTCTTGGTTGATGTGCAGGGTGTCAGGCCCTCTACTGCGAAGGCTAATTTTAGCCAAAGAATGGGGTTGCCTCAGGAATAACTTGGGAATCTGGACTTTTATGTCCTTCACCATTTCAGATATCTGGTCATACAGGCGGTGAAGTAATGACTGTTGCTGACATGCATGAAAGGAAACTGAAATGGCTCATCAAGATGATGCTTTAATTGCTCTTCCAGGTGGGTTTACTTAATGTTGATGGCTATTACAATTTCTTGCTTGCCTTATTTGATAAGGGTGTTGAAGAGGGATTTATAAAGCCTTCTGCACGGCATATTGTTGTGTCTGCTCCAACAGGAAAAGAACTTATAGCCAGGACGTAGGAATGTGTACCTATACACGACACGGTTGCTCCCCAAGGAAACTGGGAAATTGAATGACTAGGATACCCTGCAGCCTCTGATTTGCATTCATAATAAATTTGACCTAGCTTGGTCCCTAATTGTAGGCAGTTGTTGTTTGTTTCGAATGATTCATTGTTGCAACA

Ace file of the UniGene sp_v3.0_unigene113305

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lysine decarboxylase-like protein [Arabidopsis thaliana]	-	-	6.0e-21	44%
FL-Next	sp=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Sma3	Carboxy-lyase, putative	-	-	3.479e-12	-

Source	Gene names
Sma3	At5g11950; GSVIVT00023201001; GSVIVT00028777001; GSVIVT00032184001; LOC_Os10g33900; OSJNBa0055P24.10; Os10g0479500; POPTRDRAFT_595075; POPTRDRAFT_667811; POPTRDRAFT_711981; POPTRDRAFT_819477; POPTRDRAFT_833328; POPTRDRAFT_878386; RCOM_0034230; RCOM_070602

Source	GOs	Term	Type	e value	Identity
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	IPR005269	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G11950.1	Putative lysine decarboxylase family protein chr5:3855072-3856815 FORWARD LENGTH=216	1.0e-26	45%
RefSeq	Arabidopsis thaliana	NP_196756.2	cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Arabidopsis thaliana]	1.0e-26	45%
RefSeq	Populus trichocarpa	XP_002314282.1	predicted protein [Populus trichocarpa]	8.0e-28	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q84MC2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 144 - 216

Fln protein: WGFLPLG*CAGCQALYCEG*F*PKNGVASGITWESGLLCPSPFQISGHTGGEVMTVADMHERKLKWLIKMML*LLFQVGLLNVDGYYNFLLALFDKGVEEGFIKPSARHIVVSAPTGKELIART*ECVPIHDTVAPQGNWEIE*

Protein Length: 145

Fln nts: ATGGGGATTTCTGCCTCTTGGTTGATGTGCAGGGTGTCAGGCCCTCTACTGCGAAGGCTAATTTTAGCCAAAGAATGGGGTTGCCTCAGGAATAACTTGGGAATCTGGACTTTTATGTCCTTCACCATTTCAGATATCTGGTCATACAGGCGGTGAAGTAATGACTGTTGCTGACATGCATGAAAGGAAACTGAAATGGCTCATCAAGATGATGCTTTAATTGCTCTTCCAGGTGGGTTTACTTAATGTTGATGGCTATTACAATTTCTTGCTTGCCTTATTTGATAAGGGTGTTGAAGAGGGATTTATAAAGCCTTCTGCACGGCATATTGTTGTGTCTGCTCCAACAGGAAAAGAACTTATAGCCAGGACGTAGGAATGTGTACCTATACACGACACGGTTGCTCCCCAAGGAAACTGGGAAATTGAATGA___CTAGGATACCCTGCAGCCTCTGATTTGCATTCATAATAAATTTGACCTAGCTTGGTCCCTAATTGTAGGCAGTTGTTGTTTGTTTCGAATGATTCATTGTTGCAACA

Fln Alignment:

AllPine_a_c47485___GVASGITWESGL----LCPS---PFQISGHTGGEVMTVADMHERXXXXXXXXXXXXXFQ------------------------VGLLNVDGYYNFLLALFDKGVEEGFIKPSARHIVVSAPTGKELIART*ECVPIHDTVAPQGNWEIE*LG-YP
Q84MC2________________GLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEELGDYP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain