SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113261

Length: 499 nt

UniGene Fasta

>sp_v3.0_unigene113261
GGAAACCATATCTCTAGACTTCATCACCGACTTACCTCGCACCAGGAAGAAGCACAACTCAATTATGGTGGTAGTAGACAAATTGAGCAAAACTGCTTACTTCATACTTGTGAAATCCACTTACAAAACTGTGGAAATCACAGACATATTTATGAAGGAAATTTTTCGTCTGCACGAAATACCCAAGGTGGTGATTTCTAATAGGGATGTAAATTTTACATCCACATTATGGAAAACTCTCTTTTCAGGATTGGGTACTTAGATCCAATTTAGTACTACCTACCATCCTCAAACAAACGGATAGACCGAACAGTTAAATCAGTGTTGGAGGACATGCTACACATGTTTGTGATGCACCAGCCACATAAGTGGGAAGACTATCTCCACTTAGTGGAATTTGCATATAACAATGGACATCATGAATCACTGGGCATGAGCCCCTTTGAAGTGTTGTATGGGAGAAAGTGCAGGGTACCCATAGATTAGAACAATCTCCCAT

Ace file of the UniGene sp_v3.0_unigene113261

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSJNBb0115I09.18 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XL94_ORYSJ	-	-	3.0e-33	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	42%
Sma3	Retrotransposon protein, putative, Ty3-gypsy subclass	-	-	2.599e-36	-

Source	Gene names
Sma3	AT4g07850; B1168G10.5; B1234D02.1; F5K24.1; H0207B04.5; H0211F06-OSIGBa0153M17.12; H0409D10.7; H0425E08.11; H0502B11.9; H0502G05.7; H0512B01.1; H0522A01.6; H0616A11.3; H0807C06-H0308C08.9; H0820C10.2; LOC_Os03g21350; LOC_Os03g23110; LOC_Os03g23200; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AMX0

Fln msg: Overlapping hits, possible frame ERROR between 322 and 313, Unexpected STOP codon at 3' end. Distance to subject end: 169 aas, your sequence is shorter than subject: 162 - 374

Fln protein: ETISLDFITDLPRTRKKHNSIMVVVDKLSKTAYFILVKSTYKTVEITDIFMKEIFRLHEIPKVVISNRDVNFTSTLWKTLFSGLGT*IQFSTTYHPQTNG*TExxxxxLEDMLHMFVMHQPHKWEDYLHLVEFAYNNGHHESLGMSPFEVLYGRKCRVPID*

Protein Length: 163

Fln nts: GGAAACCATATCTCTAGACTTCATCACCGACTTACCTCGCACCAGGAAGAAGCACAACTCAATTATGGTGGTAGTAGACAAATTGAGCAAAACTGCTTACTTCATACTTGTGAAATCCACTTACAAAACTGTGGAAATCACAGACATATTTATGAAGGAAATTTTTCGTCTGCACGAAATACCCAAGGTGGTGATTTCTAATAGGGATGTAAATTTTACATCCACATTATGGAAAACTCTCTTTTCAGGATTGGGTACTTAGATCCAATTTAGTACTACCTACCATCCTCAAACAAACGGATAGACCGAAxxxxxxxxxxxxxxxTTGGAGGACATGCTACACATGTTTGTGATGCACCAGCCACATAAGTGGGAAGACTATCTCCACTTAGTGGAATTTGCATATAACAATGGACATCATGAATCACTGGGCATGAGCCCCTTTGAAGTGTTGTATGGGAGAAAGTGCAGGGTACCCATAGATTAGAACAATCTCCCAT

Fln Alignment:

AllPine_a_c47429___ETISLDFITDLPRTRKKHNSIMVVVDKLSKTAYFILVKSTYKTVEITDIFMKEIFRLHEIPKVVISNRDVNFTSTLWKTLFSGLGT*IQFSTTYHPQTNG*TEQxxxVLEDMLHMFVMHQPHKWEDYLHLVEFAYNNGHHESLGMSPFEVLYGRKCRVPID*NNL
A5AMX0________________EHITMDFVIGLPRTLGGNNAIWVIVDRLTKSAHFLPMKVNFSLDRLASLYVKEIVRMHGVPVSIVSDRDPRFTSRFWHSLQKALGTKLSFSTAFHPQTDGQSEMxxxVLEDLLRACILELQGNWDDHLPLVKFAYNNSFQASIGMTPFEALYGRKCRSPICWNDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain