SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113224

Length: 383 nt

UniGene Fasta

>sp_v3.0_unigene113224
ATGGGCAATCCCGAACAAAATGGAGTTATAGAAAGGAAAAATAGAACACTTGAAGAATGTATACGAACAATGATTTTTTATCAAGATATTCCTAAATTTCTATGGGGAGAAGCAACAATGACCGTTGTATATATACAAAATAGAAGTCCTCATAGAATCCTCAATAATATGACACCTGAAGAAGCATTCATAGGAAGGAAGCCATGTGTGGACCATCTCTGAATCTTTGGATGCCCCACCTATATCCATGTTCCAAAGGACAAACGAAAGAAGCTAGATTCTACAAGCATTAAAGGGATTTTCGTTGGCTACAGTCTTTCTTCAAAGGCATATAAATCTACATCAAGGAAGGAAGACATATTGAAGTAAGCAGGGACGTTATA

Ace file of the UniGene sp_v3.0_unigene113224

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	copia-type polyprotein [Arabidopsis thaliana]	-	-	7.0e-26	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Copia-type polyprotein	-	-	4.671e-12	-

Source	Gene names
Sma3	At2g15650; At2g17490; F11I4_21; MtrDRAFT_AC149577g2v1; SDM1_42t00010; SDM1_47t00010; T15M6.14; T16L24.270; T18I24.5; T20K12.230; T28P6.8; T2O9.150; T9G5.7; VITISV_001281; VITISV_001759; VITISV_002860; VITISV_005279; VITISV_008931; VITISV_011061; VITISV_01

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3		IPR010256	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 51 aas, your sequence is shorter than subject: 123 - 407

Fln protein: MGNPEQNGVIERKNRTLEECIRTMIFYQDIPKFLWGEATMTVVYIQNRSPHRILNNMTPEEAFIGRKPCVDHL*IFGCPTYIHVPKDKRKKLDSTSIKGIFVGYSLSSKAYKSTSRKEDILK*

Protein Length: 124

Fln nts: ATGGGCAATCCCGAACAAAATGGAGTTATAGAAAGGAAAAATAGAACACTTGAAGAATGTATACGAACAATGATTTTTTATCAAGATATTCCTAAATTTCTATGGGGAGAAGCAACAATGACCGTTGTATATATACAAAATAGAAGTCCTCATAGAATCCTCAATAATATGACACCTGAAGAAGCATTCATAGGAAGGAAGCCATGTGTGGACCATCTCTGAATCTTTGGATGCCCCACCTATATCCATGTTCCAAAGGACAAACGAAAGAAGCTAGATTCTACAAGCATTAAAGGGATTTTCGTTGGCTACAGTCTTTCTTCAAAGGCATATAAATCTACATCAAGGAAGGAAGACATATTGAAGTAAGCAGGGACGTTATA

Fln Alignment:

AllPine_a_c47380___PEQNGVIERKNRTLEECIRTMIFYQDIPKFLWGEATMTVVYIQNRSPHRILNNMTPEEAFIGRKPCVDHL*IFGCPTYIHVPKDKRKKLDSTSIKGIFVGYSLSSKAYK
B8LKX7________________PQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYR

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
115	66			33	0.997464
117		66	33		0.997461
123	33	66			0.997455
124		66		33	0.997453
126		33		66	0.997453
127	33			66	0.997453
128	33		66		0.997452
153	66		33		0.997452
170	66	33			0.997452
177		66		33	0.997452
178	33	33		33	0.997753
179	33		66		0.997452
192	33	33		33	0.997753
211			66	33	0.997452
221		33		66	0.997452
235		66		33	0.997458
239	66			33	0.997452
250		33		66	0.997452
266	33	66			0.997452
271			66	33	0.997454
274	33		66		0.997454
275		66	33		0.997453
285		66		33	0.997454

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain