SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113022

Length: 272 nt

UniGene Fasta

>sp_v3.0_unigene113022
GGAAGGTATTCGTGGGTGTACATTAACTCTTAAGCTGAAGACTATAGCATTTGAGGTCCGAACCAGAGCAGTTTCTTTACAATTATATATTTGCTCAAAAGACGACATTTTGCATCATTCTTTGAAGTTGCTTAAAGCTGAGCTTCCTCTATCCTTGAGATTGATAGGTCTCCGCATATCACATTTCAAGGATGAAAAATCTGGGCCTTCTGATCCCACTCAGAAAACTCTTACCAGCTATTTATCTTCAGGAATATTACTCAACGGGGTGA

Ace file of the UniGene sp_v3.0_unigene113022

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase kappa subunit [Arabidopsis thaliana] gb\|AAS91582.1\| DNA-directed polymerase kappa [Arabidopsis thaliana] gb\|AEE32503.1\| DNA polymerase kappa subunit [Arabidopsis thaliana]	-	-	5.0e-12	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	70%

Source	Gene names
Sma3	At1g49980; F2J10.13; GSVIVT00001470001; LOC_Os03g42010; OJ1285_H07.4; Os03g0616300; OsI_12613; OsJ_11733; POLK;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	damaged DNA binding	GO:0003684	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G49980.1	DNA/RNA polymerases superfamily protein chr1:18508026-18512111 FORWARD LENGTH=671	5.0e-16	62%
RefSeq	Arabidopsis thaliana	NP_175420.3	DNA polymerase kappa subunit [Arabidopsis thaliana]	7.0e-16	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SXQ2

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 90 - 704

Fln protein: EGIRGCTLTLKLKTIAFEVRTRAVSLQLYICSKDDILHHSLKLLKAELPLSLRLIGLRISHFKDEKSGPSDPTQKTLTSYLSSGILLNGV

Protein Length: 91

Fln nts: GGAAGGTATTCGTGGGTGTACATTAACTCTTAAGCTGAAGACTATAGCATTTGAGGTCCGAACCAGAGCAGTTTCTTTACAATTATATATTTGCTCAAAAGACGACATTTTGCATCATTCTTTGAAGTTGCTTAAAGCTGAGCTTCCTCTATCCTTGAGATTGATAGGTCTCCGCATATCACATTTCAAGGATGAAAAATCTGGGCCTTCTGATCCCACTCAGAAAACTCTTACCAGCTATTTATCTTCAGGAATATTACTCAACGGGGTGA

Fln Alignment:

AllPine_a_c47125___EGIRGCTLTLKLKTIAFEVRTRAVSLQLYICSKDDILHHXXXXXXXXXXXXXXXIGLRISHFKDEKSGP-SDPTQKTLTSYLSSG
D7SXQ2________________EGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALKLLNAELPLSLRLIGLRISHFNEDKDGHLSDPTQKTLANFIISG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain