SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene112978

Length: 298 nt

UniGene Fasta

>sp_v3.0_unigene112978
ATGGGGGCTCCCAGTTATAGCATCGAGCGATGGCTGAAAGTGAAAAGGAATATGAATGCCAAGAGAAGTGTAACATGGAGCCTCAAGGATTAATCGCCATGGATAACTCCGTGGATCTCAAAGGCAGGCCGACTCTCAGGTCCAAAACTGGAAGATGGAAAGCTTGTTACTTCCTCATTGGCTATGAGATCTTAGAGAGGATGTCTTTCTATGGAATTGCCTCCAATTTGTTATTTACTTAACAACTAAACTCCATGAGGGCACTGTGAATTCTTCAAAGAATGTCAATAACTGGTCA

Ace file of the UniGene sp_v3.0_unigene112978

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oligopeptide transporter, putative n=1 Tax=Ricinus communis RepID=B9SKP9_RICCO	-	-	3.0e-19	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Oligopeptide transporter, putative	-	-	1.542e-10	-

Source	Gene names
Sma3	At2g40460; GSVIVT00028535001; GSVIVT00028536001; LOC_Os10g33170; OSJNBa0079L16.9; Os10g0469900; OsI_19508; OsI_33983; OsI_33988; OsJ_18109; OsJ_31852; POPTRDRAFT_1108216; POPTRDRAFT_849875; POPTRDRAFT_850459; RCOM_0543230; RCOM_0543240; RCOM_0688830; VITI

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40460.1	Major facilitator superfamily protein chr2:16897123-16901171 FORWARD LENGTH=583	7.0e-17	64%
RefSeq	Arabidopsis thaliana	NP_181578.1	putative peptide/nitrate transporter [Arabidopsis thaliana]	8.0e-17	64%
RefSeq	Populus trichocarpa	XP_002301861.1	predicted protein [Populus trichocarpa]	1.0e-20	70%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Overlapping hits, possible frame ERROR between 233 and 230, Distance to subject end: 506 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 90 - 604

Fln protein: MAESEKEYECQEKCNMEPQGLIAMDNSVDLKGRPTLRSKTGRWKACYFLIGYEILERMSFYGIASNxxxYLTTKLHEGTVNSSKNVNNWS

Protein Length: 91

Fln nts: ATGGGGGCTCCCAGTTATAGCATCGAGCG_-_ATGGCTGAAAGTGAAAAGGAATATGAATGCCAAGAGAAGTGTAACATGGAGCCTCAAGGATTAATCGCCATGGATAACTCCGTGGATCTCAAAGGCAGGCCGACTCTCAGGTCCAAAACTGGAAGATGGAAAGCTTGTTACTTCCTCATTGGCTATGAGATCTTAGAGAGGATGTCTTTCTATGGAATTGCCTCCAATxxxxxxxxxTACTTAACAACTAAACTCCATGAGGGCACTGTGAATTCTTCAAAGAATGTCAATAACTGGTCA

Fln Alignment:

AllPine_a_c47077___HRAMAESEKEYECQEKCNMEPQGLIAMDNSVDLKGRPTLRSKTGRWKACYFLIGYEILERMSFYGIASNLxIYLTTKLHEGTVNSSKNVNNWS
A9NWU3________________HTRTAMEDHSSACESPLLATPDNDLAEDGSTDLKGKPVRKSLTGGWTASLLIIGIEIAERLAYYGIASNLxTYLTNIMHQTTVTAVKNVNVWA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain