SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene112417

Length: 351 nt

UniGene Fasta

>sp_v3.0_unigene112417
ATGGGGGGAAAAATGGGCGCGCCAAAGAAGACTTCTCAGTCCTGCCTTCCACGCAGAAACGTTAAAGACTATGGTGCCAGTGATTGTGGCGAGCGCAACCAGTCTGCTAGACAAATGGACCGAGTCAATCAATTCTGGTGAGAAAGAGATAGAGGTATTCAATGAATTCCGAAATCTGTCTGGTGATGTGATTGCCAGAACGGCTTTTGGCAGTAGCTATATGGAAGGAAAACACATCTTCGACTTGCAGACCGAGCAAGCACGTCTAGTTGTTGAAGGCTTTCGTAACTTCAGTATTCCAGGTTACAGGTTTTTACCCACGAGAAGTAATTTGAAAGGTCGAAGGCTAGA

Ace file of the UniGene sp_v3.0_unigene112417

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PHYB activation tagged suppressor 1 protein [Arabidopsis thaliana] gb\|AAB95305.1\| putative cytochrome P450 [Arabidopsis thaliana] gb\|AAQ65187.1\| At2g26710 [Arabidopsis thaliana] dbj\|BAD42995.1\| putative cytochrome P450 [Arabidopsis thaliana] dbj\|BAF01580.	-	-	9.0e-29	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Cytochrome P450	-	-	5.828e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Secologanin synthase.	EC:1.3.3.9	-	4.631e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	Monoterpenoid biosynthesis	00902	4.631e-16	%
Sma3	Biosynthesis of terpenoids and steroids	01062	4.631e-16	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	4.631e-16	%
Sma3	Metabolic pathways	01100	4.631e-16	%
Sma3	Biosynthesis of secondary metabolites	01110	4.631e-16	%

Source	Gene names
Sma3	At2g26710; B1085F01.11; B1085F01.12; CL-8904; CYP721A2v1; CYP721A2v2; CYP721A5; CYP721A7v1; CYP721A8; CYP72A18; CYP72A21; CYP72A39; CYP72A59; CYP72A66; CYP72A84; CYP72D1; CYP72D2-1; CYP734A; CYP734A10; CYP734A8; CYP734A9; GSVIVT00009515001; GSVIVT00009516

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	steroid hydroxylase activity	GO:0008395	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	brassinosteroid homeostasis	GO:0010268	Biological Process	-
Sma3	brassinosteroid metabolic process	GO:0016131	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group II	IPR002402	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26710.1	BAS1, CYP734A1, CYP72B1 Cytochrome P450 superfamily protein chr2:11380700-11383413 FORWARD LENGTH=520	9.0e-36	50%
RefSeq	Arabidopsis thaliana	NP_180239.1	PHYB activation tagged suppressor 1 protein [Arabidopsis thaliana]	1.0e-35	50%
RefSeq	Populus trichocarpa	XP_002332385.1	cytochrome P450 [Populus trichocarpa]	3.0e-34	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Distance to subject end: 257 aas, your sequence is shorter than subject: 116 - 517

Fln protein: WGEKWARQRRLLSPAFHAETLKTMVPVIVASATSLLDKWTESINSGEKEIEVFNEFRNLSGDVIARTAFGSSYMEGKHIFDLQTEQARLVVEGFRNFSIPGYRFLPTRSNLKGRRL

Protein Length: 117

Fln nts: ATGGGGGGAAAAATGGGCGCGCCAAAGAAGACTTCTCAGTCCTGCCTTCCACGCAGAAACGTTAAAGACTATGGTGCCAGTGATTGTGGCGAGCGCAACCAGTCTGCTAGACAAATGGACCGAGTCAATCAATTCTGGTGAGAAAGAGATAGAGGTATTCAATGAATTCCGAAATCTGTCTGGTGATGTGATTGCCAGAACGGCTTTTGGCAGTAGCTATATGGAAGGAAAACACATCTTCGACTTGCAGACCGAGCAAGCACGTCTAGTTGTTGAAGGCTTTCGTAACTTCAGTATTCCAGGTTACAGGTTTTTACCCACGAGAAGTAATTTGAAAGGTCGAAGGCTAGA

Fln Alignment:

AllPine_a_c46388___GEKWARQRRLLSPAFHAETLKTMVPVIVASATSLLDKWTESINSGEKEIEVFNEFRNLSGDVIARTAFGSSYMEGKHIFDLQTEQARLVVEGFRNFSIPGYRFLPTRSN
A9NWW9________________GEKWVQHRRIINPAFHLDFLKGMVPTIVESTANMLEKWGKLVLSGAEEVEVLKEFCNLTADVISRTALGSSYAEAKHIFNLQDQQMLLTAELVLSVYVPGFRFLPTRKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain