SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene112177

Length: 377 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene112177
ATTCAAATGTTGATGCCTTTCTGAAGGTCTGTCAGAAGTTGGGATTAACGGGTATAGATCTATTCTCTCCACCCGATGTTGTTGAGAAGAGGGACATCCGAAGTGTTTGTCTATGCATTCGTGCACTTTCAAAGAAAGCCCGGTCAAAGCATTTAGATGTGCCTGATTTTGATATTGTCACTCATGGCTTATCCATGCCTACAGACATGGTGGATAGTATTCGAAAATACTTAGAGACGGTGACGTATGCCGTGTCCTGCAAAAGTGAATACAGCCCTGGTTCAGGCTCAAATGGACCATTGGGAAATAACAATGAACCATTCTTCACAGGATCATTTGAACTATCACCCGAGGACCCTGATGAAGCAGAAAGTAAG

Ace file of the UniGene sp_v3.0_unigene112177 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	Gene names
Sma3	GSVIVT00019239001; LOC_Os03g49630; OSJNBa0004L11.13; Os03g0703300; OsI_13189; OsJ_12264; POPTRDRAFT_828088; RCOM_1764760; VITISV_037916;

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002330447.1	predicted protein [Populus trichocarpa]	2.0e-32	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS30

Fln msg: Distance to subject end: 557 aas, your sequence is shorter than subject: 125 - 777

Fln protein: SNVDAFLKVCQKLGLTGIDLFSPPDVVEKRDIRSVCLCIRALSKKARSKHLDVPDFDIVTHGLSMPTDMVDSIRKYLETVTYAVSCKSEYSPGSGSNGPLGNNNEPFFTGSFELSPEDPDEAESK

Protein Length: 126

Fln nts: ATTCAAATGTTGATGCCTTTCTGAAGGTCTGTCAGAAGTTGGGATTAACGGGTATAGATCTATTCTCTCCACCCGATGTTGTTGAGAAGAGGGACATCCGAAGTGTTTGTCTATGCATTCGTGCACTTTCAAAGAAAGCCCGGTCAAAGCATTTAGATGTGCCTGATTTTGATATTGTCACTCATGGCTTATCCATGCCTACAGACATGGTGGATAGTATTCGAAAATACTTAGAGACGGTGACGTATGCCGTGTCCTGCAAAAGTGAATACAGCCCTGGTTCAGGCTCAAATGGACCATTGGGAAATAACAATGAACCATTCTTCACAGGATCATTTGAACTATCACCCGAGGACCCTGATGAAGCAGAAAGTAAG

Fln Alignment:

AllPine_a_c46100___SNVDAFLKVCQKLGLTGIDLFSPPDVVEKRDIRSVCLCIRALSKKARSKHLDVPDFDIVTHGLSMPTDMVDSIRKYLETVTYAVSCKSEYXXXXXXXXXXXXXXXPFFTGSFELSPEDPDEAESK
B8LS30________________SNVDAFLKVCQKLGLTGIDLFSPPDVVEKKDIRRVCLCIRALSKKARSRHLDVPDFDVVTHGFFMPTDMVDSIRKYLEKTSYTVSGKSEYSPGPGLKGKLGNNNEPFFTGRLELSPEDPDEAESK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain