SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene112128

Length: 487 nt

UniGene Fasta

>sp_v3.0_unigene112128
GAGTCATCAAGAACCTTCGAGTATGTGGTGATTGCCATTGTGCCATCAAGTTCATCTCCAGAATGTTGGACGTGAAATCATTGTGAGAGATGCTAATCGTTTCCATCATTTCAAAGATGGAAGTGTTCTTGCGGGGATTATTGGTGAGGTTATGTGAGACTAGATGTAAGCACAGATTGGTTAAGAGGCTTAACTTTGCCCATCTGGGATTTTAAGAGTCATCGGACAAAGTGCTTTTATTATTTGCAAACATCTTTTAAGTTCCTGCAGCAGGACGGAGTTAGAAATTTGGCCATGCCTGAATTCTAGGAAATGGGTGTTTACTTGCACATTTCTTACTGAAATCTCTCCCTTTTGCTGATTGCATGCGAGTGCTTGAATACATTATTTGAGCTAAATGTGCTGTTTATGGATTCAGCATGTTAATTTGCTTGGCCCCTCACAGGGTCTTACAGGGCCATGTGGCAGGGCGAGGGAGTGCATTAAC

Ace file of the UniGene sp_v3.0_unigene112128

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q5G1T1.1\|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49170, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2261; Flags: Precursor gb\|AAW62962.1\| emb	-	-	3.0e-09	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Pentatricopeptide repeat protein	-	-	8.28e-22	-

Source	Gene names
Sma3	PPR;

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49170.1	EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18226954-18229600 REVERSE LENGTH=850	4.0e-11	83%
RefSeq	Arabidopsis thaliana	NP_190486.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	6.0e-11	83%
RefSeq	Populus trichocarpa	XP_002310592.1	predicted protein [Populus trichocarpa]	7.0e-12	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Overlapping hits, possible frame ERROR between 71 and 65, your sequence is shorter than subject: 52 - 246

Fln protein: VIKNLRVCGDCHCAIKFISRxxxxEIIVRDANRFHHFKDGSVLAGIIGEVM*

Protein Length: 53

Fln nts: GAGTCATCAAGAACCTTCGAGTATGTGGTGATTGCCATTGTGCCATCAAGTTCATCTCCAGAxxxxxxxxxxxxGAAATCATTGTGAGAGATGCTAATCGTTTCCATCATTTCAAAGATGGAAGTGTTCTTGCGGGGATTATTGGTGAGGTTATGTGAGACTAGATGTAAGCACAGATTGGTTAAGAGGCTTAACTTTGCCCATCTGGGATTTTAAGAGTCATCGGACAAAGTGCTTTTATTATTTGCAAACATCTTTTAAGTTCCTGCAGCAGGACGGAGTTAGAAATTTGGCCATGCCTGAATTCTAGGAAATGGGTGTTTACTTGCACATTTCTTACTGAAATCTCTCCCTTTTGCTGATTGCATGCGAGTGCTTGAATACATTATTTGAGCTAAATGTGCTGTTTATGGATTCAGCATGTTAATTTGCTTGGCCCCTCACAGGGTCTTACAGGGCCATGTGGCAGGGCGAGGGAGTGCATTAAC

Fln Alignment:

AllPine_a_c46040___VIKNLRVCGDCHCAIKFISRMxxREIIVRDANRFHHFKDGSVLAG
D5AAE0________________IIKNLRVCGDCHTATKFISKIxxREIIIRDANRFHHFKDGLCSCG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain