SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene112113

Length: 483 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene112113
GCGGAGAGTGAGAGAGGCCGTTGTGGTACTGTTCTGTATTGCATTAATTGCAATGCCTTGCGTTATTCTCTCAAACACAGCAAAGCCAAGCCAGTTAATAACTCAGTCTGCAGTCAAATGGCGGAGGAGTTACAGTTTTGGCAGAAACTCGTGGCCTGAGGATGCCAAACTGAATGCTGAATATGCTAAGTTGGAAGCAATTTTACAAAAGGCTGCTAATGGTTGATAAGACAGTTATAATTACCACGTTAAATCAGGCATGGGCAACCCCAAATTCCATGATTGATCTTTTCTTGGAGAGCTTTCGGTTAGGGGATGGAATTAGCAGTTTTTTGGATCATTTAATTATAGTGGCTTTGGATCAAAAGGCTTATGATCGGTGCATATCCATCCATGCTCACTGCTTTATTCTCAAGACTGATGGAGTTGACTTCGCTAGTGAGAAGCTTTTCATGACAGATGATTATTTAAAGATGATGTAGA

Ace file of the UniGene sp_v3.0_unigene112113 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotid_trans domain containing protein	-	-	1.0e-10	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Regulatory protein, putative, expressed	-	-	1.439e-08	-

Source	Gene names
Sma3	AT4g19970; At1g14590; At2g02060; At4g15970; At4g19970; FCAALL.245; GSVIVT00000878001; GSVIVT00000880001; GSVIVT00035127001; H0307D04.3; LOC_Os03g03730; LOC_Os03g63270; OJ1528D07.8; OJ1770_H02.30; OJ1789_C07.9; OSJNBa0013K16.10; OSJNBb0096M04.35; Os02g0686

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transposase activity	GO:0004803	Molecular Function	-
Sma3	transposition, DNA-mediated	GO:0006313	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transposase, IS1	IPR005063	-	-
Sma3	Nucleotide-diphospho-sugar transferase	IPR005069	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein chr1:4998957-5000617 REVERSE LENGTH=386	5.0e-33	64%
RefSeq	Arabidopsis thaliana	NP_172911.1	putative myb DNA binding protein [Arabidopsis thaliana]	6.0e-33	64%
RefSeq	Populus trichocarpa	XP_002311563.1	predicted protein, partial [Populus trichocarpa]	2.0e-34	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLR9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 184 aas, your sequence is shorter than subject: 160 - 422

Fln protein: GE*ERPLWYCSVLH*LQCLALFSQTQQSQAS**LSLQSNGGGVTVLAETRGLRMPN*MLNMLSWKQFYKRLLMVDKTVIITTLNQAWATPNSMIDLFLESFRLGDGISSFLDHLIIVALDQKAYDRCISIHAHCFILKTDGVDFASEKLFMTDDYLKMM*

Protein Length: 161

Fln nts: GCGGAGAGTGAGAGAGGCCGTTGTGGTACTGTTCTGTATTGCATTAATTGCAATGCCTTGCGTTATTCTCTCAAACACAGCAAAGCCAAGCCAGTTAATAACTCAGTCTGCAGTCAAATGGCGGAGGAGTTACAGTTTTGGCAGAAACTCGTGGCCTGAGGATGCCAAACTGAATGCTGAATATGCTAAGTTGGAAGCAATTTTACAAAAGGCTGCTAATGGTTGATAAGACAGTTATAATTACCACGTTAAATCAGGCATGGGCAACCCCAAATTCCATGATTGATCTTTTCTTGGAGAGCTTTCGGTTAGGGGATGGAATTAGCAGTTTTTTGGATCATTTAATTATAGTGGCTTTGGATCAAAAGGCTTATGATCGGTGCATATCCATCCATGCTCACTGCTTTATTCTCAAGACTGATGGAGTTGACTTCGCTAGTGAGAAGCTTTTCATGACAGATGATTATTTAAAGATGATGTAGA

Fln Alignment:

AllPine_a_c46023___DKTVIITTLNQAWATPNSMIDLFLESFRLGDGISSFLDHLIIVALDQKAYDRCISIHAHCFILKTDGVDFASEKLFMTDDYLKMM
B8LLR9________________NRTVIITALNVAWAEPNTMIDLFLESFRVGEGTPELLNNLLIVALDAKAYDRCLEIHPHCYTLKTRGVDFSAEKLYMSDDYLKMM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain