SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111970

Length: 260 nt

UniGene Fasta

>sp_v3.0_unigene111970
ATTGGGCTTGAATTGAGATCTGAAATAGAATGTTTTTATGTCCTAGCCTGAAGGATTTGCTATGAAGGGACATGAACATAAAGTATGCAAATTTGTGAAATCCTTGTATGGCTTCAAGCAAGCACCGCGAGCCTGGTATGAGAATTTAACTGAGCATCTTCTGAAACTCAACTTCAAACATTATGATTTTGATGATGCAACTTTGTTTGTCAAGAATGTTGGCAAAACAATTGTATATCTTGTGGTATATGTAGATGATC

Ace file of the UniGene sp_v3.0_unigene111970

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Sciadopitys verticillata RepID=Q4JQ38_SCIVE	-	-	1.0e-15	53%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	42%

Source	Gene names
Sma3	RT;

Source	GOs	Term	Type	e value	Identity
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Distance to subject end: 272 aas, your sequence is shorter than subject: 86 - 542

Fln protein: LGLN*DLK*NVFMS*PEGFAMKGHEHKVCKFVKSLYGFKQAPRAWYENLTEHLLKLNFKHYDFDDATLFVKNVGKTIVYLVVYVDD

Protein Length: 87

Fln nts: ATTGGGCTTGAATTGAGATCTGAAATAGAATGTTTTTATGTCCTAGCCTGAAGGATTTGCTATGAAGGGACATGAACATAAAGTATGCAAATTTGTGAAATCCTTGTATGGCTTCAAGCAAGCACCGCGAGCCTGGTATGAGAATTTAACTGAGCATCTTCTGAAACTCAACTTCAAACATTATGATTTTGATGATGCAACTTTGTTTGTCAAGAATGTTGGCAAAACAATTGTATATCTTGTGGTATATGTAGATGATC

Fln Alignment:

AllPine_a_c45844___LN*DLK*NVFMS*PEGFAMKGHEHKVCKFVKSLYGFKQAPRAWYENLTEHLLKLNFKHYDFDDATLFVKNVGKTIVYLVVYVDD
Q9M5J7________________LHGDLEEEIYMKQPEGFVVKGNKELVCKINKSLCGVKQSPRMWYQKFDTYILRLGFV-ISRADHCVYSKQVGNHFIYVVLYVDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain