SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111688

Length: 457 nt

UniGene Fasta

>sp_v3.0_unigene111688
GGGGAGAAACATCTTCTTCCAGAGGGTGAGCTTTTGCAATCTCAGCATACTGCAGGTTGGAATGTTGGAGTGGGAAGCAGTGCACTGTCTAGTTTTCACACGTTGGCAGATTTTCTTCTTGCATTAACAAATGCTGACGGTGATGGAAGAATTATTGTTTCAAAGACAACCACAGCTAGTCTAGAGGAACATAAAGAAGGATCCCTTAAGTTTGTGATGCTTGATGCAGAGAAGCTTTTTGCAGAGATTGTAGATCAAGCCCACACTGTTGTTCTGGCAGGTGGAACACTACAGCCAGTAGACGAGATAAAGGAACGACTATTCCCTCACCTACAACCAGATCGACTGCACTTATTTTCTTGTGGCCATATTGTTCCACCTGAGAGCATTTTACCTATTGCCATCTCACGTGGACCTACAGGAAGATCTTTTGATTTTACTTATCAGTCCCGTAGCT

Ace file of the UniGene sp_v3.0_unigene111688

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to helicase [Strongylocentrotus purpuratus]	-	-	4.0e-25	48%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	63%

Source	Gene names
Sma3	At1g79890; B1003C08.1; F19K16.15; GSVIVT00034393001; Os05g0219800; OsI_18924; OsJ_17579; PHYPADRAFT_226571; POPTRDRAFT_797535; RCOM_1494470; VITISV_017477;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase-like, DEXD box c2 type	IPR006554	-	-
Sma3	ATP-dependent helicase, C-terminal	IPR006555	-	-
Sma3	DEAD2	IPR010614	-	-
Sma3	DNA helicase (DNA repair), Rad3 type	IPR013020	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type	IPR014013	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79890.1	RAD3-like DNA-binding helicase protein chr1:30048655-30052203 FORWARD LENGTH=882	8.40779e-45	58%
RefSeq	Arabidopsis thaliana	NP_178107.1	chromosome transmission fidelity protein 1 [Arabidopsis thaliana]	9.80909e-45	58%
RefSeq	Populus trichocarpa	XP_002299703.1	predicted protein [Populus trichocarpa]	0.0	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1KG67

Fln msg: Distance to subject end: 265 aas, your sequence is shorter than subject: 152 - 897

Fln protein: GEKHLLPEGELLQSQHTAGWNVGVGSSALSSFHTLADFLLALTNADGDGRIIVSKTTTASLEEHKEGSLKFVMLDAEKLFAEIVDQAHTVVLAGGTLQPVDEIKERLFPHLQPDRLHLFSCGHIVPPESILPIAISRGPTGRSFDFTYQSRS

Protein Length: 153

Fln nts: GGGGAGAAACATCTTCTTCCAGAGGGTGAGCTTTTGCAATCTCAGCATACTGCAGGTTGGAATGTTGGAGTGGGAAGCAGTGCACTGTCTAGTTTTCACACGTTGGCAGATTTTCTTCTTGCATTAACAAATGCTGACGGTGATGGAAGAATTATTGTTTCAAAGACAACCACAGCTAGTCTAGAGGAACATAAAGAAGGATCCCTTAAGTTTGTGATGCTTGATGCAGAGAAGCTTTTTGCAGAGATTGTAGATCAAGCCCACACTGTTGTTCTGGCAGGTGGAACACTACAGCCAGTAGACGAGATAAAGGAACGACTATTCCCTCACCTACAACCAGATCGACTGCACTTATTTTCTTGTGGCCATATTGTTCCACCTGAGAGCATTTTACCTATTGCCATCTCACGTGGACCTACAGGAAGATCTTTTGATTTTACTTATCAGTCCCGTAGCT

Fln Alignment:

AllPine_a_c45492___SALSSFHTLADFLLALTNADGDGRIIVSKTTTASLEEHKEGSLKFVMLDAEKLFAEIVDQAHTVVLAGGTLQPVDEIKERLFPHLQPDRLHLFSCGHIVPPESILPIAISRGPTGRSFDFTYQSRS
I1KG67________________SCISAFQALADILLSLTNNDGDGRIIISRSRSTSFKK-QGGHIKYVMLSGEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPWLPPNQLHFFSCGHIVPPDSIMPIAVTRGPTGRSFDFSFSSRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain