SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111677

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene111677
TTGAAGCCTGAGAATTCTGCATGTTATGTGCTGCTGTCAAACATCTATGCTGCTAGCTGGCATGTGGGATGATGTAGCAAAGGTGAGAACAATAATGAAAGAGAGGGGTTTGAGGAAGACTCCAGGATTCAGCTCGATTGAGGTAAACAACAACGTGCATACATTCTTTGTGGGAGACAAATCACATCCAGAATCTGAGAAAATTTATGGAATTGTAGATTC

Ace file of the UniGene sp_v3.0_unigene111677

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os09g0327200 protein n=4 Tax=Oryza sativa RepID=Q0J2K9_ORYSJ	-	-	7.0e-15	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Pentatricopeptide repeat protein	-	-	2.129e-10	-

Source	Gene names
Sma3	POPTRDRAFT_762555; POPTRDRAFT_801432; PPR;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18215788-18217848 REVERSE LENGTH=686	6.0e-17	54%
RefSeq	Arabidopsis thaliana	NP_001190038.1	tetratricopeptide repeat-like family protein [Arabidopsis thaliana]	8.0e-17	54%
RefSeq	Populus trichocarpa	XP_002309169.1	predicted protein [Populus trichocarpa]	1.0e-16	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 101 aas, your sequence is shorter than subject: 73 - 246

Fln protein: *SLRILHVMCCCQTSMLLAGMWDDVAKVRTIMKERGLRKTPGFSSIEVNNNVHTFFVGDKSHPESEKIYGIVD

Protein Length: 74

Fln nts: TTGAAGCCTGAGAATTCTGCATGTTATGTGCTGCTGTCAAACATCTATGCTGCTAGCTGGCATGTGGGATGATGTAGCAAAGGTGAGAACAATAATGAAAGAGAGGGGTTTGAGGAAGACTCCAGGATTCAGCTCGATTGAGGTAAACAACAACGTGCATACATTCTTTGTGGGAGACAAATCACATCCAGAATCTGAGAAAATTTATGGAATTGTAGATTC

Fln Alignment:

AllPine_a_c45478___AGMWDDVAKVRTIMKERGLRKTPGFSSIEVNNNVHTFFVGDKSHPESEKIYGIVD
D5AAE0________________AGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain