SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111675

Length: 707 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene111675

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	xyloglucan endotransglycosylase hydrolase [Apium graveolens]	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Xyloglucan endotransglycosylase	-	-	2.448e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	AT2G01850; ATXG; AoXET2; At1g10550; At1g14720; At1g32170; At2g01850; At2g06850; At2g36870; At3g44990; At4g13090; At4g18990; At5g13870; At5g57550; At5g65730; B1053A04.26-1; EXGT; EXGT-A1; EXGT-A2; EXGT-A3; EXGT-A4; EXGT-A5; EXGT-N2; EXT; F10B6.12; F10B6.29

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to low light intensity stimulus	GO:0009645	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	fruit development	GO:0010154	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01850.1	EXGT-A3, XTH27, ATXTH27 endoxyloglucan transferase A3 chr2:385374-387138 FORWARD LENGTH=333	61%
RefSeq	Arabidopsis thaliana	NP_178294.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002320268.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
442	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain