SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111619

Length: 221 nt

UniGene Fasta

>sp_v3.0_unigene111619
CAAAAGCCTTCGATGCTGGGAAGGTAAAGGATATTTGTACTTTTGAGTGTATGGTGGGTCTTTTTGCAAGGAATAAGAAATATTCCAGTGCAATTGAGGTGCATGAGAAATTGAGACAGGTTGGTCTTTTTCCAAGTTCAGAAACAGTCCTAACTCTGCTAGGAGCTTATTGGAAGCTTCAGCTTTTCCAAAAGGCAGAGGCCTTCTATAATGAGATGCAA

Ace file of the UniGene sp_v3.0_unigene111619

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RUK2_RICCO	-	-	1.0e-15	53%
FL-Next	sp=Pentatricopeptide repeat-containing protein At5g39980, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%

Source	Gene names
Sma3	POPTRDRAFT_808892;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39980.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:16001036-16003072 REVERSE LENGTH=678	2.0e-18	47%
RefSeq	Arabidopsis thaliana	NP_198814.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	3.0e-18	47%
RefSeq	Populus trichocarpa	XP_002324029.1	predicted protein [Populus trichocarpa]	2.0e-20	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FLD8

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 73 - 678

Fln protein: KAFDAGKVKDICTFECMVGLFARNKKYSSAIEVHEKLRQVGLFPSSETVLTLLGAYWKLQLFQKAEAFYNEMQ

Protein Length: 74

Fln nts: CAAAAGCCTTCGATGCTGGGAAGGTAAAGGATATTTGTACTTTTGAGTGTATGGTGGGTCTTTTTGCAAGGAATAAGAAATATTCCAGTGCAATTGAGGTGCATGAGAAATTGAGACAGGTTGGTCTTTTTCCAAGTTCAGAAACAGTCCTAACTCTGCTAGGAGCTTATTGGAAGCTTCAGCTTTTCCAAAAGGCAGAGGCCTTCTATAATGAGATGCAA

Fln Alignment:

AllPine_a_c45403___KAFDAGKVKDICTFECMVGLFARNKKYSSAIEVHEKLRQVGLFPSSETVLTLLGAYWKLQLFQKAEAFYNEMQ
Q9FLD8________________QAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain