SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111570

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene111570
TATTTAAATGCGGACTCTAATAACCTGATAGGAAACATTCCCGCCAAACTGTGTGATCTGGCCAGGTTACAACACATTGACCTAGGATATAACAATTTGACGGGTACAATCCCGGCGTGCTGGGGAAACATATCCTCTTTGGTGTACATTCGTTTGGATAAGAACAACCTTCACGGGAATATCCCTTCCCAGTTGGGTATGCTCAGTCTGCTCTTCTACATCTCTATTT

Ace file of the UniGene sp_v3.0_unigene111570

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0609900 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0DZM8_ORYSJ	-	-	3.0e-11	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G36180.1	Leucine-rich receptor-like protein kinase family protein chr4:17120209-17123698 REVERSE LENGTH=1136	4.0e-14	45%
RefSeq	Arabidopsis thaliana	NP_195341.2	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana]	5.0e-14	45%
RefSeq	Populus trichocarpa	XP_002310296.1	predicted protein [Populus trichocarpa]	2.0e-14	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PST3

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 76 - 211

Fln protein: YLNADSNNLIGNIPAKLCDLARLQHIDLGYNNLTGTIPACWGNISSLVYIRLDKNNLHGNIPSQLGMLSLLFYISI

Protein Length: 77

Fln nts: TATTTAAATGCGGACTCTAATAACCTGATAGGAAACATTCCCGCCAAACTGTGTGATCTGGCCAGGTTACAACACATTGACCTAGGATATAACAATTTGACGGGTACAATCCCGGCGTGCTGGGGAAACATATCCTCTTTGGTGTACATTCGTTTGGATAAGAACAACCTTCACGGGAATATCCCTTCCCAGTTGGGTATGCTCAGTCTGCTCTTCTACATCTCTATTT

Fln Alignment:

AllPine_a_c45336___YLNADSNNLIGNIPAKLCDLARLQHIDLGYNNLTGTIPACWGNISSLVYIRLDKNNLHGNIPSQLGMLSLLFYISI
C0PST3________________YLELYKNNIVGRIPKELGNLKSLVSLDLYHNNLSGDIPASLGKLKSLRFLRLNGNKLTGRIPRELMNLSSLKIVDL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain