SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111496

Length: 443 nt

UniGene Fasta

>sp_v3.0_unigene111496
CGTCGTGACCTGGGATGTCACTCAGTGGAGAAGGCGGCAAAGAAGTAGGAAATCAAATCAAAATGCCTGTGGCTCGGCCGGAACCTCAGGAGGTTCGAGTGATTGCTCATGTAGATTTGGATTGTTTCTACGTCCAAGTGGAGCAGAGGAAGAGGCCAGAGTTACGTGGAAAGCCTGCAGCAGTCGTACAATATAATTCATGGAAAGGAGGAGGTTTGATTGCTGTGGGTTATGAAGCTCGTAAGTTTGGTGTTAAGCGTTCAATGCGTGGTGATGAAGCGAAAAAAAGTGTGTCCAGACATTCAGTTAATCCAGGTTCCAGTTGCCCGGGGAAAAGCAGACTTGAATCTTTATCGTGATGCTGGATCAGAGGTAGTTTCTGTGCTGTCAAGGAAGGGAAAATGTGAACGAGCATCTATTGATGAGGTATACCTTGACATTAC

Ace file of the UniGene sp_v3.0_unigene111496

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative DNA polymerase [Oryza sativa Japonica Group]	-	-	0.0	89%
FL-Next	Isoform 4 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1	-	-	0.0	45%

Source	Gene names
Sma3	At5g44740; B1131G08.4-1; B1131G08.4-2; GSVIVT00030106001; Os01g0757800; OsI_03798; OsJ_03511; PHYPADRAFT_134789; POLH; RCOM_1196260; T19K24.15;

Source	GOs	Term	Type	Identity
Sma3	damaged DNA binding	GO:0003684	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	DNA polymerase eta	IPR017061	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G44740.2	POLH Y-family DNA polymerase H chr5:18047903-18051779 REVERSE LENGTH=672	0.0	83%
RefSeq	Arabidopsis thaliana	NP_568638.2	DNA polymerase eta subunit [Arabidopsis thaliana]	0.0	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A3EWL3-4

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 141 aas, your sequence is shorter than subject: 119 - 630

Fln protein: S*PGMSLSGEGGKEVGNQIKMPVARPEPQEVRVIAHVDLDCFYVQVEQRKRPELRGKPAAVVQYNSWKGGGLIAVGYEARKFGVKRSMRGDEAKKSVSRHSVNPGSSCPGKSRLESLS*

Protein Length: 120

Fln nts: CGTCGTGACCTGGGATGTCACTCAGTGGAGAAGGCGGCAAAGAAGTAGGAAATCAAATCAAAATGCCTGTGGCTCGGCCGGAACCTCAGGAGGTTCGAGTGATTGCTCATGTAGATTTGGATTGTTTCTACGTCCAAGTGGAGCAGAGGAAGAGGCCAGAGTTACGTGGAAAGCCTGCAGCAGTCGTACAATATAATTCATGGAAAGGAGGAGGTTTGATTGCTGTGGGTTATGAAGCTCGTAAGTTTGGTGTTAAGCGTTCAATGCGTGGTGATGAAGCGAAAAAAAGTGTGTCCAGACATTCAGTTAATCCAGGTTCCAGTTGCCCGGGGAAAAGCAGACTTGAATCTTTATCGTGATGCTGGATCAGAGGTAGTTTCTGTGCTGTCAAGGAAGGGAAAATGTGAACGAGCATCTATTGATGAGGTATACCTTGACATTAC

Fln Alignment:

AllPine_a_c45244___IAHVDLDCFYVQVEQRKRPELRGKPAAVVQYNSWKGGGLI-AVGYEARKFGVKRSMRGDEAK
A3EWL3-4______________IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRHAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain