SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111138

Length: 442 nt

UniGene Fasta

>sp_v3.0_unigene111138
GTAACGAAGGCGAGATAGCAGTTGTCAACGTTGAGAGTTTTGGAGCACAGGGTGACGGAATAACTGATGATACCCAGGCCTTTATGAATGCATGGCAAATGGCATGCTCATTGTCAAATTCTGTTTTTCTTGTTCCTGAAGGATATGTTTACCTTGTTAAACCCATCACGTTCACAGGTCCTTGCAATTCTGGTGGCAGCATGATTGTGCAGATAGCAGGGACTGTGGTTGCCCCTGACGACCCTACGACCTGGGATCCCCAGAATCCAAGAACATGGCTTGTATTTTCCAGATTGAATGGAGTGACCATCCAGGGGGAGGGCGTTATAGATGGTTCCGGCCAGAAATGGTGGGCGCAGTCCTGCAAGACCAATAAATCAAACCCCTGCCGATCCGCTCCAACGGCATTCACCGTCGATTTAAGCTGGAACGTAATAATTAA

Ace file of the UniGene sp_v3.0_unigene111138

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase n=2 Tax=Cucumis RepID=E5GBI5_CUCME	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Polygalacturonase	-	-	1.99e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	9.387e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		9.387e-17	%
Sma3	Starch and sucrose metabolism	00500		9.387e-17	%
Sma3	Metabolic pathways	01100		9.387e-17	%
Sma3	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	1.587e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	1.587e-12	%
Sma3	Starch and sucrose metabolism	00500	1.587e-12	%
Sma3	Metabolic pathways	01100	1.587e-12	%

Source	Gene names
Sma3	ADPG1; ADPG2; At1g02460; At1g56710; At1g70500; At1g80170; At2g41850; At3g57510; CUPG1; F18B13.25; F24J13.7; F25P12.85; F5O8.2; GSVIVT00002738001; GSVIVT00022548001; GSVIVT00025571001; GSVIVT00028778001; GSVIVT00028779001; GSVIVT00028783001; GSVIVT00034593

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell wall modification involved in abscission	GO:0009830	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	anther dehiscence	GO:0009901	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G70500.1	Pectin lyase-like superfamily protein chr1:26566579-26568729 REVERSE LENGTH=468	61%
RefSeq	Arabidopsis thaliana	NP_177207.1	pectin lyase-like protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002317091.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX9

Fln msg: Distance to subject end: 267 aas, your sequence is shorter than subject: 146 - 493

Fln protein: NEGEIAVVNVESFGAQGDGITDDTQAFMNAWQMACSLSNSVFLVPEGYVYLVKPITFTGPCNSGGSMIVQIAGTVVAPDDPTTWDPQNPRTWLVFSRLNGVTIQGEGVIDGSGQKWWAQSCKTNKSNPCRSAPTAFTVDLSWNVII

Protein Length: 147

Fln nts: GTAACGAAGGCGAGATAGCAGTTGTCAACGTTGAGAGTTTTGGAGCACAGGGTGACGGAATAACTGATGATACCCAGGCCTTTATGAATGCATGGCAAATGGCATGCTCATTGTCAAATTCTGTTTTTCTTGTTCCTGAAGGATATGTTTACCTTGTTAAACCCATCACGTTCACAGGTCCTTGCAATTCTGGTGGCAGCATGATTGTGCAGATAGCAGGGACTGTGGTTGCCCCTGACGACCCTACGACCTGGGATCCCCAGAATCCAAGAACATGGCTTGTATTTTCCAGATTGAATGGAGTGACCATCCAGGGGGAGGGCGTTATAGATGGTTCCGGCCAGAAATGGTGGGCGCAGTCCTGCAAGACCAATAAATCAAACCCCTGCCGATCCGCTCCAACGGCATTCACCGTCGATTTAAGCTGGAACGTAATAATTAA

Fln Alignment:

AllPine_a_c44818___VVNVESFGAQGDGITDDTQAFMNAWQMACSLSNSVFLVPEGYVYLVKPITFTGPCNSGGSMIVQIAGTVVAPDDPTTWDPQNPRTWLVFSRLNGVTIQGEGVIDGSGQKWWAQSCKTNKSNPCRSAPTAFTVDLSWNV
B8LQX9________________VVCVDEFGAKGDGENDDTKAFNNAWSKACSSAPAVFLVPHGKKYLVKPIKFSGPCKS--ALTMQVSGTIIAPADPRVWDGLNRRQWLRFKEVDDLTVEGGGIFYGSGEQWWAESCKINKTNPCRPAPTAITFELCNNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain