SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111093

Length: 335 nt

UniGene Fasta

>sp_v3.0_unigene111093
GGTGGCAAACGTGTGATGGCATGGGGTGTGGCCTTATGGTCATTGGCAACCTTACTTACTCCATGGGCTGCAAGTTATTCTTTGGTAATGCTTCTCACTATGCGCATGTTGCTCGGTATTGCAGAAGGTGTAGCTATGCCATGCATGAACAACATGGTCTCAAGGTGGTTTCCCCGTACTGAACGAGCAAGAGCGGTGGGTCTTTCAATGGCTGGATTTCATCTTGGCAGTGTTATAGGCTTAATTTTTTCACCCATTATAATGGCACAGACAGGAGTCTTTGGTCCTTTCACTATCTTTGGAATCTGTGGTTTCCTTTGGCTTTTAGTATGGCT

Ace file of the UniGene sp_v3.0_unigene111093

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative anion transporter 4 [Arabidopsis thaliana] sp\|Q66GI9.1\|ANTR4_ARATH RecName: Full=Probable anion transporter 4, chloroplastic; AltName: Full=Phosphate transporter PHT4;3; Flags: Precursor gb\|AAU05536.1\| At3g46980 [Arabidopsis thaliana] gb\|AEE78226	-	-	9.94922e-44	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Sialin, putative	-	-	8.192e-13	-

Source	Gene names
Sma3	ANTR1; ANTR2; ANTR3; ANTR4; A_IG005I10_nn; At2g29650; At2g38060; At3g46980; At4g00370; F5I10.7; GSVIVT00021464001; GSVIVT00024146001; GSVIVT00024164001; GSVIVT00026884001; MICPUCDRAFT_44722; MICPUN_98168; OJ1003_C09.34; OJ1576_F01.6; OSJNBa0036E02.3; OSTL

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	inorganic diphosphate transmembrane transporter activity	GO:0030504	Molecular Function	-
Sma3	sodium ion binding	GO:0031402	Molecular Function	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G46980.3	" PHT4;3 phosphate transporter 4;3 chr3:17307294-17309899 REVERSE LENGTH=534"	72%
RefSeq	Arabidopsis thaliana	NP_974392.1	putative anion transporter 4 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002298326.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKH1

Fln msg: Distance to subject end: 304 aas, your sequence is shorter than subject: 111 - 671

Fln protein: GGKRVMAWGVALWSLATLLTPWAASYSLVMLLTMRMLLGIAEGVAMPCMNNMVSRWFPRTERARAVGLSMAGFHLGSVIGLIFSPIIMAQTGVFGPFTIFGICGFLWLLVW

Protein Length: 112

Fln nts: GGTGGCAAACGTGTGATGGCATGGGGTGTGGCCTTATGGTCATTGGCAACCTTACTTACTCCATGGGCTGCAAGTTATTCTTTGGTAATGCTTCTCACTATGCGCATGTTGCTCGGTATTGCAGAAGGTGTAGCTATGCCATGCATGAACAACATGGTCTCAAGGTGGTTTCCCCGTACTGAACGAGCAAGAGCGGTGGGTCTTTCAATGGCTGGATTTCATCTTGGCAGTGTTATAGGCTTAATTTTTTCACCCATTATAATGGCACAGACAGGAGTCTTTGGTCCTTTCACTATCTTTGGAATCTGTGGTTTCCTTTGGCTTTTAGTATGGCT

Fln Alignment:

AllPine_a_c44760___GGKRVMAWGVALWSLATLLTPWAASYSLVMLLTMRMLLGIAEGVAMPCMNNMVSRWFPRTERARAVGLSMAGFHLGSVIGLIFSPIIMAQTGVFGPFTIFGICGFLWLLVW
B8LKH1________________GGKRVLGFGVVWWSIATILTPIAARVGLPFLLLVRAFMGIGEGVAMPAMNNILSRWIPAKERSRSLALVYSGMYLGSVAGLAFSPFLIQKFSWPSVFYSFGSLGTIWFATW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain