SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111084

Length: 449 nt

UniGene Fasta

>sp_v3.0_unigene111084
ATGGGATGTAATTGCAGCAACAGCAGCTACCATGCTCCCAATGAGGTGAGGTTGTGCGAGAAGGGCCGATCGAATGATGCCTTCCACAGTATTAGGAATCAGCCTCTGAATTCCGTTGCTTATCACAGTCTTTTGCAGGGTTGCATCGACAGAAGAGTTTTGCCAGAAGGCAAATTAATACATGCTCACATCATTCAGTCAGGTTTTGTATGCCCAGACGTATCTTTAGGAAATAAACTCGTTACCATTTATGCCAAGCACGGTAGCCTGGCGGATGCTTGTAGAGTTTTGGATCAAATGGCCGAACGGGACGTTCTGTCATGGACTGTCATGATTTCAGCTTATGCCAGGAATGGGTGTGCGGAAGAAGCCCTGGAACTGTATTATAAAATGCGAGGAACAGGTATCCAACCCGATCGATTCACCTTTGCAAGTGTGCTGCCTGCATG

Ace file of the UniGene sp_v3.0_unigene111084

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SL84_RICCO	-	-	9.0e-21	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 149 - 644

Fln protein: MGCNCSNSSYHAPNEVRLCEKGRSNDAFHSIRNQPLNSVAYHSLLQGCIDRRVLPEGKLIHAHIIQSGFVCPDVSLGNKLVTIYAKHGSLADACRVLDQMAERDVLSWTVMISAYARNGCAEEALELYYKMRGTGIQPDRFTFASVLPA

Protein Length: 150

Fln nts: ATGGGATGTAATTGCAGCAACAGCAGCTACCATGCTCCCAATGAGGTGAGGTTGTGCGAGAAGGGCCGATCGAATGATGCCTTCCACAGTATTAGGAATCAGCCTCTGAATTCCGTTGCTTATCACAGTCTTTTGCAGGGTTGCATCGACAGAAGAGTTTTGCCAGAAGGCAAATTAATACATGCTCACATCATTCAGTCAGGTTTTGTATGCCCAGACGTATCTTTAGGAAATAAACTCGTTACCATTTATGCCAAGCACGGTAGCCTGGCGGATGCTTGTAGAGTTTTGGATCAAATGGCCGAACGGGACGTTCTGTCATGGACTGTCATGATTTCAGCTTATGCCAGGAATGGGTGTGCGGAAGAAGCCCTGGAACTGTATTATAAAATGCGAGGAACAGGTATCCAACCCGATCGATTCACCTTTGCAAGTGTGCTGCCTGCATG

Fln Alignment:

AllPine_a_c44747___LCEKGRSNDAFHSIRNQPLNSV-----AYHSLLQGCIDRRVLPEGKLIHAHIIQSGFVCPDVSLGNKLVTIYAKHGSLADACRVLDQMAERDVLSWTVMISAYARNGCAEEALELYYKMRGTGIQPDRFTFASVLPA
B8LLJ0________________LCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain