SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111002

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene111002
GCCAGAGCAGTGGGCGCAAGGGAGGGGCGTTGGCCATGGCGGAGAATCCCGGAACGTTTCTGAGAGATGGCGAATCAGAGTCGTCGAGCACGAACTCAGTGAGAGCCCGTTTCGAGAAAATGATAAAGAAAGCGCAGGATGATGTTTGCGCGGCGGTAGAGGCGGTGGACGGGCACAATTTCAAGGAGGACGTGTGGTCGA

Ace file of the UniGene sp_v3.0_unigene111002

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Coproporphyrinogen III oxidase [Arabidopsis thaliana] gb\|AAL15338.1\| At4g03205 [Arabidopsis thaliana] gb\|AAP21154.1\| At4g03205 [Arabidopsis thaliana] gb\|AEE82290.1\| Coproporphyrinogen III oxidase [Arabidopsis thaliana]	-	-	1.0e-10	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Coproporphyrinogenase	-	-	1.616e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Coproporphyrinogen oxidase.	EC:1.3.3.3	-	7.655e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	7.655e-12	%
Sma3	Metabolic pathways	01100	7.655e-12	%
Sma3	Biosynthesis of secondary metabolites	01110	7.655e-12	%

Source	Gene names
Sma3	At1g03475; At4g03205; CPO; CPX; F21B7.10; GSVIVT00037523001; HEMF; LIN2; PHYPADRAFT_109483; PHYPADRAFT_224363; VITISV_044041; hemF;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	coproporphyrinogen oxidase activity	GO:0004109	Molecular Function	-
Sma3	porphyrin-containing compound biosynthetic process	GO:0006779	Biological Process	-
Sma3	heme biosynthetic process	GO:0006783	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Coproporphyrinogen III oxidase, aerobic	IPR001260	-	0.0	-
Sma3	Coproporphyrinogen III oxidase, conserved site	IPR018375	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G03205.2	hemf2 Coproporphyrinogen III oxidase chr4:1412814-1413703 FORWARD LENGTH=240	2.0e-15	66%
RefSeq	Arabidopsis thaliana	NP_567256.3	Coproporphyrinogen III oxidase [Arabidopsis thaliana]	2.0e-15	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL28

Fln msg: Distance to subject end: 277 aas, your sequence is shorter than subject: 66 - 393

Fln protein: QSSGRKGGALAMAENPGTFLRDGESESSSTNSVRARFEKMIKKAQDDVCAAVEAVDGHNFKEDVWS

Protein Length: 67

Fln nts: GCCAGAGCAGTGGGCGCAAGGGAGGGGCGTTGGCCATGGCGGAGAATCCCGGAACGTTTCTGAGAGATGGCGAATCAGAGTCGTCGAGCACGAACTCAGTGAGAGCCCGTTTCGAGAAAATGATAAAGAAAGCGCAGGATGATGTTTGCGCGGCGGTAGAGGCGGTGGACGGGCACAATTTCAAGGAGGACGTGTGGTCGA

Fln Alignment:

AllPine_a_c44643___AMAENPGTFLRDGESESSSTNSVRARFEKMIKKAQDDVCAAVEAVDGHNFKEDVWS
B8LL28________________AMAEKPGTFLRDSEGEPSGTNSVRARFEKMIRKAQDDVCVAVEAVDGHGFREDVWS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain