SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene110928

Length: 225 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene110928
AATTTTTCAGTTCTTTTACTTTGACTCATTGGAATCTCTTCCTAAGCATCCCCTTAGGCCTGAGGATATTATGCCTCTGAATTGTCGATATGATGCTCAAATTTCTGTTTTTGGAACAAATCTGCAAAAGATATTGGAGGAATCCAATGTATTTGTTGTTGGAGCAGGTGCTCTGGGATGTGAATTCTTAAAAAACTTGCTCTCATGGGAGCTTCCTGTAGAAGT

Ace file of the UniGene sp_v3.0_unigene110928 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-activating enzyme E1 n=2 Tax=Physcomitrella patens subsp. patens RepID=A9REZ6_PHYPA	-	-	2.0e-22	74%
FL-Next	sp=Ubiquitin-activating enzyme E1 3; Triticum aestivum (Wheat).	-	-	0.0	73%
Sma3	Ubiquitin-activating enzyme E1	-	-	0.0	-

Source	Gene names
Sma3	At2g30110; At5g06460; CHLREDRAFT_191903; GSVIVT00001293001; GSVIVT00024047001; LOC_Os03g18380; LOC_Os11g01510; LOC_Os12g01520; MICPUCDRAFT_30909; OSTLU_35452; Os03g0294900; Os07g0692900; Os11g0106400; OsI_27435; OsI_34806; OsI_37167; OsJ_10472; OsJ_25682;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	small protein activating enzyme activity	GO:0008641	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin/SUMO-activating enzyme E1	IPR000011	-	-
Sma3	Ubiquitin-activating enzyme repeat	IPR000127	-	-
Sma3	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	-
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ubiquitin-activating enzyme, E1, active site	IPR018074	-	-
Sma3	Ubiquitin-activating enzyme, E1	IPR018075	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G06460.1	ATUBA2, UBA 2 ubiquitin activating enzyme 2 chr5:1970239-1974382 FORWARD LENGTH=1077	1.0e-26	75%
RefSeq	Arabidopsis thaliana	NP_568168.1	ubiquitin-activating enzyme E1 2 [Arabidopsis thaliana]	1.0e-26	75%
RefSeq	Populus trichocarpa	XP_002313232.1	predicted protein, partial [Populus trichocarpa]	4.0e-27	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P31252

Fln msg: Distance to subject end: 560 aas, your sequence is shorter than subject: 74 - 1053

Fln protein: IFQFFYFDSLESLPKHPLRPEDIMPLNCRYDAQISVFGTNLQKILEESNVFVVGAGALGCEFLKNLLSWELPVE

Protein Length: 75

Fln nts: AATTTTTCAGTTCTTTTACTTTGACTCATTGGAATCTCTTCCTAAGCATCCCCTTAGGCCTGAGGATATTATGCCTCTGAATTGTCGATATGATGCTCAAATTTCTGTTTTTGGAACAAATCTGCAAAAGATATTGGAGGAATCCAATGTATTTGTTGTTGGAGCAGGTGCTCTGGGATGTGAATTCTTAAAAAACTTGCTCTCATGGGAGCTTCCTGTAGAAGT

Fln Alignment:

AllPine_a_c44559___QFFYFDSLESLPKHPLRPEDIMPLNCRYDAQISVFGTNLQKILEESNVFVVGAGALGCEFLKNL
P31252________________QFFYFDSVESLPTYPLEPQDLKPSNNRYDAQVSVFGSKLQKKMEEANTFVVGSGALGCEFLKNL

SNPs (tot: 3)

Position	C %	G %	T %	Probability
184	33		66	0.997458
186		66	33	0.997464
187		66	33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain