SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene110858

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene110858
TAATGATGCCCTGATTAATGCTTGGGTGTTTTTCCGTTACATGGTGATTGGTTTGTATGTTGGGGTTGCAACAGTTGGTATTTTCACTCTTTGGTACACACATGATTCAGTTTTTGGGATAGACTTCTTTGCAGATGAGCACACATTGGTAACTTTTTCGCAGCTCAGGTCTTGGGGAGAATGCCCAA

Ace file of the UniGene sp_v3.0_unigene110858

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	P-type ATPase [Hordeum vulgare]	-	-	8.0e-20	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Endoplasmic reticulum [ER]-type calcium ATPase	-	-	5.06e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Calcium-transporting ATPase.	EC:3.6.3.8	-	9.418e-10	-

Source	Gene names
Sma3	ACA3; ACA5; A_TM018A10.4; At1g07670; At1g07810; At4g00900; CA6; CA7; CHLREDRAFT_77047; ECA1; ECA2; ECA4; F24B9.9; GSVIVT00008659001; GSVIVT00024422001; LCA1; LOC_Os03g17310; OSTLU_29095; Os05g0120700; OsI_11041; OsI_18241; OsJ_10376; OsJ_16928; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	integral to endoplasmic reticulum membrane	GO:0030176	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G07670.1	ATECA4, ECA4 endomembrane-type CA-ATPase 4 chr1:2370305-2374196 REVERSE LENGTH=1061	3.0e-24	65%
RefSeq	Arabidopsis thaliana	NP_172246.3	Ca2+-transporting ATPase [Arabidopsis thaliana]	4.0e-24	65%
RefSeq	Populus trichocarpa	XP_002320213.1	endoplasmic reticulum [ER]-type calcium ATPase [Populus trichocarpa]	2.0e-25	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEI1

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 62 - 340

Fln protein: NDALINAWVFFRYMVIGLYVGVATVGIFTLWYTHDSVFGIDFFADEHTLVTFSQLRSWGECP

Protein Length: 63

Fln nts: TAATGATGCCCTGATTAATGCTTGGGTGTTTTTCCGTTACATGGTGATTGGTTTGTATGTTGGGGTTGCAACAGTTGGTATTTTCACTCTTTGGTACACACATGATTCAGTTTTTGGGATAGACTTCTTTGCAGATGAGCACACATTGGTAACTTTTTCGCAGCTCAGGTCTTGGGGAGAATGCCCAA

Fln Alignment:

AllPine_a_c44466___NDALINAWVFFRYMVIGLYVGVATVGIFTLWYTHDSVFGIDFFADEHTLVTFSQLRSWGEC
D5AEI1________________NDSLIDAWVLFRYLVIGLYVGLATVGIFAIWYTHESFLGISLVGDGHTLVSFSQLRTWDQC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain