SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene110547

Length: 460 nt

UniGene Fasta

>sp_v3.0_unigene110547
ATGGGAGTTCCTTTGTAGTTTGTTATTTTCTATTTTTCTTTCTGTGCAACCGGGACATGGTGGCTTCTACTGGTCCTCATGTTGTAGTTCCCAACTTCAAGTACCATATCATATTGATCTGCTCTTTTCTCGACAGCTTGGTATGGATTTCAAAAGTTCCAGATCACAGTCTTCTGTATACCAAATGGAAGCCTTTAACTCAATAAGAAAGAGGGCAGGAGTGGCCATAATTATTTGTGATACTTGATTGATTATGTCCCGAAGTTACCAAAGGGAGAGCTTAGAGTTCACTGGAAAGGGGCAGCAGAAGTCATATTAGACCTATGTAGTAGCTGGCTGGATGTTGATGGAAGAGTCACAGAAGTTGCCAAGGAAATCTCTGATGTAATTACCTTGGATGACAACTTTGCTTCAGTGGTAAAGATGATGCGATGGGGACGTGCAGTTTATGCAAACCAGA

Ace file of the UniGene sp_v3.0_unigene110547

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-transporting ATPase 1 n=1 Tax=Ceratopteris richardii RepID=Q7XBH9_CERRI	-	-	7.0e-10	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Autoinhibited calcium ATPase	-	-	9.681e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Calcium-transporting ATPase.	EC:3.6.3.8	-	4.367e-11	-

Source	Gene names
Sma3	ACA10; ACA9; At3g21180; At4g29900; F27B13.140; GSVIVT00031301001; MXL8.3; MtrDRAFT_AC155895g7v2; PCA1; PHYPADRAFT_202276; POPTRDRAFT_259851; POPTRDRAFT_652846; POPTRDRAFT_725300; POPTRDRAFT_765045; RCOM_1562340; RCOM_1707830; pca1;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	single fertilization	GO:0007338	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	inflorescence morphogenesis	GO:0048281	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG4

Fln msg: Distance to subject end: 250 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 73 - 387

Fln protein: YLIDYVPKLPKGELRVHWKGAAEVILDLCSSWLDVDGRVTEVAKEISDVITLDDNFASVVKMMRWGRAVYANQ

Protein Length: 74

Fln nts: ATGGGAGTTCCTTTGTAGTTTGTTATTTTCTATTTTTCTTTCTGTGCAACCGGGACATGGTGGCTTCTACTGGTCCTCATGTTGTAGTTCCCAACTTCAAGTACCATATCATATTGATCTGCTCTTTTCTCGACAGCTTGGTATGGATTTCAAAAGTTCCAGATCACAGTCTTCTGTATACCAAATGGAAGCCTTTAACTCAATAAGAAAGAGGGCAGGAGTGGCCATAATTATTTGTGATACTTGATTGATTATGTCCCGAAGTTACCAAAGGGAGAGCTTAGAGTTCACTGGAAAGGGGCAGCAGAAGTCATATTAGACCTATGTAGTAGCTGGCTGGATGTTGATGGAAGAGTCACAGAAGTTGCCAAGGAAATCTCTGATGTAATTACCTTGGATGACAACTTTGCTTCAGTGGTAAAGATGATGCGATGGGGACGTGCAGTTTATGCAAACCAGA

Fln Alignment:

AllPine_a_c44071___TEVAKEISDVITLDDNFASVVKMMRWGRAVYAN
D5AEG4________________TEVAKESSDIIILDDNFASVVKVVRWGRSVYAN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain