SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene110408

Length: 2151 nt

UniGene Fasta

>sp_v3.0_unigene110408
ATATGGGGCCTTCGCTTAGCCATTTCTGAGTTTGGCCATAGCGATTTTTTCCATTGGATCGTGATTTTGGATCAGTAAGTCCCCGAGGTGGCCTGGGATCGGTTCCTGGACTTCTTTGTCTTCAATTTCTTTCTGCTATCACAATGGCGTCGGAGAAGATCAAGGTGGAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACCAGGGTCATATGGACAATGATTAAGGACAAGCTTATTTTTCCATTTGTAGAGCTGGATATTAAGTATTTTGATTTGGGGCTTCCCCATCGCGATGCTACAGATGACAAGGTTACAATTGAGAGTGCAGAAGCCACATTAAAATACAATGTGGCCATCAAGTGTGCAACTATCACACCAGATGAAGCTCGAGTCAAGGAATTCGACTTGAAGGCTATGTGGAAGAGTCCCAATGGGACTATCCGTAACATTTTGAATGGTACCGTGTTCAGAGAGCCAATCTTATGTAAGAACGTCCCTAAGCTTGTTCCAGGATGGACAAAGGCCATATGTATTGGAAGACATGCTTTTGGTGACCAATACAAAGCAACAGATACAGTTATCAAGGGCCCTGGCAAGCTGAAATTAGTTTTCGTTCCAGAGAAAGATGGTGAAACATCTGAGTTAGAGGTGTACAACTTCAAAGGTGATGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCGATACGTTCATTTGCTGAGGCTTCAATGACCGTGGCCTATGAGAAGAAGTGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACGATGGAAGGTTCAAAGATATTTTCCAAGAGGTCTATGAATCCAACTGGAAAAGTAAATATGAAAAAGCAGGAATCTGGTATGAACATAGGCTTATCGATGACATGGTAGCCTATGCATTAAAGAGTGAAGGGGGCTATGTATGGGCGTGCAAAAATTACGATGGTGATGTACAGAGTGATTTCTTGGCACAGGGATTTGGATCCCTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATCGAGGCCGAAGCAGCTCATGGCACTGTTACTCGGCATTACCGCGTACATCAAAAGGGAGGTGAAACTAGCACGAACAGCATTGCTTCTATTTTTGCATGGACACGTGGGCTTGCACACAGGGCAAAACTGGACGGAAATGCAAGGCTACTTGAATTTGCAGAGAAGCTGGAAGTTGCTTGTGTAGGTACTGTTGAGGCCGGAAAAATGACAAAAGACTTGGCGCTAATTATTCACGGTTCCAACCTTTCCAGGGAGCACTACCTAAACACTGAAGAGTTTATTGACGCAGTGGCAGCCGATCTGAAAATAAGACTTTCTGCAAAACCAAAGTTGTAACCCTTCTGCATCCTTTCGTTGGCCTGGCATTGGCTGATATTTTCATAATAGCTTTGGCAGAATTCATCAGATAGTATTTAAATAGGTTCGGCATGAGTTTAAGGGATGTTTAAACTTTAAAGTCTGTAGCATCTAATAATCGTGTTAGTTTAGTGGAATTCTGTAGTCTCAATGGATTGGGTTTATAGAATTCAGTACAAAACGAAAAGTGGTTTTTTATTCTTAAGTTGTGGAAAGTTTTGTGGAATAAAAATTCTAACTGGAATTTCCCCCCACCCTGCAGGAGTTCTTAAGGGATTGTGAAATGTGTGGCGATTTTGATCCTGCAAGAGTTGTTTGAAGTCGTAGGTCAGTCAGCTACTAGGGGAAATGCATGTGGCCCATGGAATATCTGTTGTGACATTTGAAAGGAAAAACATTGGCTGTGTTTCCAATTTAAAACTTTACGGTTGCAATAGTCATTGCTATGTTTCGAGGGATTATTTCCTCTTAAATCTTAATACTCCTGCACAGAAGTCTCTAATCAGTTATCATGGGCTATGTATGTGCGGCTACACAAGCGCACAAGAATAAATATTGTTTTAACTAGAAACTCCAAAGTAGATAGCAGACAGCAAAATTGTATGCATAATGTATGCATAATTTAACCCTGGATAGGTACGCTTGATTGAATGGATTCAAAGTGTCTGCATGTGTTGTTCTTAAGTTTTCTTATTCAAGCATCTTTGGGATAAAAGAACGGTCCAAAATTAAAGCC

Ace file of the UniGene sp_v3.0_unigene110408

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isocitrate dehydrogenase [NADP] n=4 Tax=Pinaceae RepID=B8LKH5_PICSI	-	-	0.0	95%
FL-Next	sp=Isocitrate dehydrogenase [NADP]; Pinus pinaster (Maritime pine).	-	-	0.0	99%

Source	ECs	Term	Type	e value	Identity
Sma3	Isocitrate dehydrogenase (NADP(+)).	EC:1.1.1.42	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Citrate cycle (TCA cycle)	00020	%
Sma3	Glutathione metabolism	00480	%
Sma3	Carbon fixation pathways in prokaryotes	00720	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	GOs	Term	Type	Identity
Sma3	isocitrate dehydrogenase (NADP+) activity	GO:0004450	Molecular Function	-
Sma3	isocitrate metabolic process	GO:0006102	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Isocitrate dehydrogenase NADP-dependent, eukaryotic-type	IPR004790	-	0.0	-
Sma3	Isocitrate/isopropylmalate dehydrogenase	IPR001804	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G65930.1	cICDH cytosolic NADP+-dependent isocitrate dehydrogenase chr1:24539088-24541861 FORWARD LENGTH=410	87%
RefSeq	Arabidopsis thaliana	NP_176768.1	isocitrate dehydrogenase [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002305928.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A0AR16

Fln msg:

Fln protein: MASEKIKVENPIVEMDGDEMTRVIWTMIKDKLIFPFVELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEARVKEFDLKAMWKSPNGTIRNILNGTVFREPILCKNVPKLVPGWTKAICIGRHAFGDQYKATDTVIKGPGKLKLVFVPEKDGETSELEVYNFKGDGGVALAMYNTDESIRSFAEASMTVAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYESNWKSKYEKAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDGNARLLEFAEKLEVACVGTVEAGKMTKDLALIIHGSNLSREHYLNTEEFIDAVAADLKIRLSAKPKL*

Protein Length: 418

Fln nts: ATATGGGGCCTTCGCTTAGCCATTTCTGAGTTTGGCCATAGCGATTTTTTCCATTGGATCGTGATTTTGGATCAGTAAGTCCCCGAGGTGGCCTGGGATCGGTTCCTGGACTTCTTTGTCTTCAATTTCTTTCTGCTATCACA_-_ATGGCGTCGGAGAAGATCAAGGTGGAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACCAGGGTCATATGGACAATGATTAAGGACAAGCTTATTTTTCCATTTGTAGAGCTGGATATTAAGTATTTTGATTTGGGGCTTCCCCATCGCGATGCTACAGATGACAAGGTTACAATTGAGAGTGCAGAAGCCACATTAAAATACAATGTGGCCATCAAGTGTGCAACTATCACACCAGATGAAGCTCGAGTCAAGGAATTCGACTTGAAGGCTATGTGGAAGAGTCCCAATGGGACTATCCGTAACATTTTGAATGGTACCGTGTTCAGAGAGCCAATCTTATGTAAGAACGTCCCTAAGCTTGTTCCAGGATGGACAAAGGCCATATGTATTGGAAGACATGCTTTTGGTGACCAATACAAAGCAACAGATACAGTTATCAAGGGCCCTGGCAAGCTGAAATTAGTTTTCGTTCCAGAGAAAGATGGTGAAACATCTGAGTTAGAGGTGTACAACTTCAAAGGTGATGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCGATACGTTCATTTGCTGAGGCTTCAATGACCGTGGCCTATGAGAAGAAGTGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACGATGGAAGGTTCAAAGATATTTTCCAAGAGGTCTATGAATCCAACTGGAAAAGTAAATATGAAAAAGCAGGAATCTGGTATGAACATAGGCTTATCGATGACATGGTAGCCTATGCATTAAAGAGTGAAGGGGGCTATGTATGGGCGTGCAAAAATTACGATGGTGATGTACAGAGTGATTTCTTGGCACAGGGATTTGGATCCCTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATCGAGGCCGAAGCAGCTCATGGCACTGTTACTCGGCATTACCGCGTACATCAAAAGGGAGGTGAAACTAGCACGAACAGCATTGCTTCTATTTTTGCATGGACACGTGGGCTTGCACACAGGGCAAAACTGGACGGAAATGCAAGGCTACTTGAATTTGCAGAGAAGCTGGAAGTTGCTTGTGTAGGTACTGTTGAGGCCGGAAAAATGACAAAAGACTTGGCGCTAATTATTCACGGTTCCAACCTTTCCAGGGAGCACTACCTAAACACTGAAGAGTTTATTGACGCAGTGGCAGCCGATCTGAAAATAAGACTTTCTGCAAAACCAAAGTTGTAA___CCCTTCTGCATCCTTTCGTTGGCCTGGCATTGGCTGATATTTTCATAATAGCTTTGGCAGAATTCATCAGATAGTATTTAAATAGGTTCGGCATGAGTTTAAGGGATGTTTAAACTTTAAAGTCTGTAGCATCTAATAATCGTGTTAGTTTAGTGGAATTCTGTAGTCTCAATGGATTGGGTTTATAGAATTCAGTACAAAACGAAAAGTGGTTTTTTATTCTTAAGTTGTGGAAAGTTTTGTGGAATAAAAATTCTAACTGGAATTTCCCCCCACCCTGCAGGAGTTCTTAAGGGATTGTGAAATGTGTGGCGATTTTGATCCTGCAAGAGTTGTTTGAAGTCGTAGGTCAGTCAGCTACTAGGGGAAATGCATGTGGCCCATGGAATATCTGTTGTGACATTTGAAAGGAAAAACATTGGCTGTGTTTCCAATTTAAAACTTTACGGTTGCAATAGTCATTGCTATGTTTCGAGGGATTATTTCCTCTTAAATCTTAATACTCCTGCACAGAAGTCTCTAATCAGTTATCATGGGCTATGTATGTGCGGCTACACAAGCGCACAAGAATAAATATTGTTTTAACTAGAAACTCCAAAGTAGATAGCAGACAGCAAAATTGTATGCATAATGTATGCATAATTTAACCCTGGATAGGTACGCTTGATTGAATGGATTCAAAGTGTCTGCATGTGTTGTTCTTAAGTTTTCTTATTCAAGCATCTTTGGGATAAAAGAACGGTCCAAAATTAAAGCC

Fln Alignment:

AllPine_a_c43900___MASEKIKVENPIVEMDGDEMTRVIWTMIKDKLIFPFVELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEARVKEFDLKAMWKSPNGTIRNILNGTVFREPILCKNVPKLVPGWTKAICIGRHAFGDQYKATDTVIKGPGKLKLVFVPEKDGETSELEVYNFKGDGGVALAMYNTDESIRSFAEASMTVAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYESNWKSKYEKAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDGNARLLEFAEKLEVACVGTVEAGKMTKDLALIIHGSNLSREHYLNTEEFIDAVAADLKIRLSAKPK
A0AR16________________MASEKIKVENPIVEMDGDEMTRVIWTMIKDKLIFPFVELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEARVKEFDLKAMWKSPNGTIRNILNGTVFREPILCKNVPKLVPGWTKAICIGRHAFGDQYKATDTVIKGPGKLKLVFVPEKDGETSELEVYPFKGDGGVALAMYNTDESIRSFAEASMTVAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYESNWKSKYEKAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDGNARLLEFAEKLEVACVGTVEAGKMTKDLALIIHGSNLSREHYLNTEEFIDAVAADLKIRLSAKPK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1716	88			11	0.991528
2162	37			62	1.0
2164	22		5	72	1.0
2166	93	6			0.999364
2242	66		33		0.997454
2243	66	33			0.997454
2244			66	33	0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain