SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene110369

Length: 179 nt

UniGene Fasta

>sp_v3.0_unigene110369
CAACAAGTATTCTATGGATTTGTCTGCATTTTGGGGTTGCCTGCAGTATTTTTCTTGTAAAGATGATGGAGGGCATAATTGCTACCTCATATACTACTGGAGACAAGTTTTATGTTGATCCTGCAAAGCTGTTGCCCTTGCAGAGATTTCTTCCTCAACCCAAGGGCCAGTCAAATGGT

Ace file of the UniGene sp_v3.0_unigene110369

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE	-	-	1.0e-13	82%
FL-Next	sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	H/ACA ribonucleoprotein complex subunit 1-like protein 1	-	-	6.229e-09	-

Source	Gene names
Sma3	At3g03920; At5g18180; F20H23.3; GSVIVT00025475001; LOC_Os11g37080; MRG7.14; Os11g0579800; OsI_36586; OsJ_34372; PHYPADRAFT_136444; PHYPADRAFT_170048; POPTRDRAFT_571210; POPTRDRAFT_738456; RCOM_1121660; VITISV_003913;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	small nucleolar ribonucleoprotein complex	GO:0005732	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	IPR007504	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03920.1	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein chr3:1009123-1010379 REVERSE LENGTH=202	5.0e-19	75%
RefSeq	Arabidopsis thaliana	NP_566217.1	H/ACA ribonucleoprotein complex subunit 1 [Arabidopsis thaliana]	6.0e-19	75%
RefSeq	Populus trichocarpa	XP_002319696.1	predicted protein [Populus trichocarpa]	8.0e-18	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8VZT0

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 59 - 202

Fln protein: TSILWICLHFGVACSIFLVKMMEGIIATSYTTGDKFYVDPAKLLPLQRFLPQPKGQSNG

Protein Length: 60

Fln nts: CAACAAGTATTCTATGGATTTGTCTGCATTTTGGGGTTGCCTGCAGTATTTTTCTTGTAAAGATGATGGAGGGCATAATTGCTACCTCATATACTACTGGAGACAAGTTTTATGTTGATCCTGCAAAGCTGTTGCCCTTGCAGAGATTTCTTCCTCAACCCAAGGGCCAGTCAAATGGT

Fln Alignment:

AllPine_a_c43856___SIFLVKMMEGIIATSYTTGDKFYVDPAKLLPLQRFLPQPKGQSNG
Q8VZT0________________SLFSIKMMEGIVATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain