SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene110307

Length: 552 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene110307
GCCACCTTTCACGAGAAGGATAGTCGCGCCACGACGATCCTTGAGAGAATTCACACAGACGTGTGTGGACCTTTCTCAGTTGCTTCGACAGCAAGACACAGGTATTATGTGATTTTTGTTGATGATTTCTCTCGTAAGTGCTGGATCTTCTTCATGCAGAAGAAGAGTGAGACATATTCAAAGTTCTGTGAATTCAAAGCACTGGTCGAGAAGGAGTCGGGGAAGAAGGTGAAGGCTCTTAGGAGCGATAATGGTGGTGAATACATCTCGGACGAGTTCAAGGATTTCTGCAAGGCAGAAGGGATTCGTAGAGAGCTCATAGCTCCCCATAACCCACAGCAGAACGAGGTAGCTGAGCGGAAGAACAGAACGATCGTGGGTGCTGCACGGGCAATGTTGCATGATCAGGGCCTACCCCTTCACTTGTGGGCGGAAGCATGCAATACAGCAGTTTATGTGCAGAACCGTTTGTCCTCATAGAATACTTGGCATGAGTACACCCGAGGAGGCTTATTCTAGTAAGAAGCCCGATCTTTCTCATTTGAGGACATT

Ace file of the UniGene sp_v3.0_unigene110307 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH	-	-	5.60519e-45	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	6.386e-17	-

Source	Gene names
Sma3	At2g05390; At2g05960; At2g07550; At2g13930; At2g15650; At2g15700; At2g17490; B1110B01.4; F11I4_21; GSVIVT00019821001; H0306F03.15; H0413E07.4; LOC_Os03g26290; LOC_Os03g27910; LOC_Os03g46450; LOC_Os03g56530; LOC_Os03g61660; LOC_Os10g01450; LOC_Os10g01750;

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR010256	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 103 aas, your sequence is shorter than subject: 160 - 407

Fln protein: ATFHEKDSRATTILERIHTDVCGPFSVASTARHRYYVIFVDDFSRKCWIFFMQKKSETYSKFCEFKALVEKESGKKVKALRSDNGGEYISDEFKDFCKAEGIRRELIAPHNPQQNEVAERKNRTIVGAARAMLHDQGLPLHLWAEACNTAVYVQNRLSS*

Protein Length: 161

Fln nts: GCCACCTTTCACGAGAAGGATAGTCGCGCCACGACGATCCTTGAGAGAATTCACACAGACGTGTGTGGACCTTTCTCAGTTGCTTCGACAGCAAGACACAGGTATTATGTGATTTTTGTTGATGATTTCTCTCGTAAGTGCTGGATCTTCTTCATGCAGAAGAAGAGTGAGACATATTCAAAGTTCTGTGAATTCAAAGCACTGGTCGAGAAGGAGTCGGGGAAGAAGGTGAAGGCTCTTAGGAGCGATAATGGTGGTGAATACATCTCGGACGAGTTCAAGGATTTCTGCAAGGCAGAAGGGATTCGTAGAGAGCTCATAGCTCCCCATAACCCACAGCAGAACGAGGTAGCTGAGCGGAAGAACAGAACGATCGTGGGTGCTGCACGGGCAATGTTGCATGATCAGGGCCTACCCCTTCACTTGTGGGCGGAAGCATGCAATACAGCAGTTTATGTGCAGAACCGTTTGTCCTCATAGAATACTTGGCATGAGTACACCCGAGGAGGCTTATTCTAGTAAGAAGCCCGATCTTTCTCATTTGAGGACATT

Fln Alignment:

AllPine_a_c43786___KDSRATTILERIHTDVCGPFSVASTARHRYYVIFVDDFSRKCWIFFMQKKSETYSKFCEFKALVEKESGKKVKALRSDNGGEYISDEFKDFCKAEGIRRELIAPHNPQQNEVAERKNRTIVGAARAMLHDQGLPLHLWAEACNTAVYVQNR
B8LKX7________________KSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain