SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene109933

Length: 449 nt

UniGene Fasta

>sp_v3.0_unigene109933
TACTCTTGATTTGTTTCGTACAGGGAAGGTGAATGTTTTGGTGACCACGAATGTCACGGAAGAGGGTATCGACGTTCAAGATTGTAGATCTATAATTCGTTTTGATTTGCCAAGTTCTGTTCGCAGCTATATTCAGTCTCGTGGACGAGCTCGTCGACCTGAGTCGGATTATATTGTACTTCTTGAGAGGAGCAATGAGAAACAACTGAACCTGTTTTATAATGTAATAAGGAGTGAAAATTCGATGAGAAATTTATCCTTGAATAGAAGCCACATTTCTTTAACTCCAAAGGCTAGCGTTGCAAAAGAACCGGCTCTATATAGTGTGTCACGAACTGGTGCCTCAGTTAATTGTGACTCCAGTGTCAGTTTTATCTACAAATATTGTTCAAAGTTGCCCGGAGACAAGTACTATTTGCCACGACCAGAATTTGTGTTCAGGTCCGTTG

Ace file of the UniGene sp_v3.0_unigene109933

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dicer-like protein 4 [Arabidopsis thaliana] sp\|P84634.2\|DCL4_ARATH RecName: Full=Dicer-like protein 4 gb\|AAZ80387.1\| dicer-like 4 [Arabidopsis thaliana] gb\|AED92830.1\| dicer-like protein 4 [Arabidopsis thaliana]	-	-	1.0e-23	43%
FL-Next	sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice).	-	-	0.0	52%
Sma3	Dicer-like protein	-	-	3.366e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribonuclease III.	EC:3.1.26.3	-	2.094e-07	-

Source	Gene names
Sma3	DCL901; DCL904; GSVIVT00026189001; GSVIVT00032302001; LOC_Os10g34430; OSJNBa0029C15.23; Os01g0909200; Os10g0485600; OsI_04862; OsJ_04485; OsJ_31945; P0456E05.21; POPTRDRAFT_260546; POPTRDRAFT_770140; RCOM_0707850; RCOM_1340690; VITISV_035236;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ribonuclease III activity	GO:0004525	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease III domain	IPR000999	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Dicer double-stranded RNA-binding fold	IPR005034	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Helicase/UvrB domain	IPR006935	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315119.1	dicer-like protein [Populus trichocarpa]	1.0e-26	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5N870

Fln msg: Distance to subject end: 1036 aas, your sequence is shorter than subject: 149 - 1651

Fln protein: TLDLFRTGKVNVLVTTNVTEEGIDVQDCRSIIRFDLPSSVRSYIQSRGRARRPESDYIVLLERSNEKQLNLFYNVIRSENSMRNLSLNRSHISLTPKASVAKEPALYSVSRTGASVNCDSSVSFIYKYCSKLPGDKYYLPRPEFVFRSV

Protein Length: 150

Fln nts: TACTCTTGATTTGTTTCGTACAGGGAAGGTGAATGTTTTGGTGACCACGAATGTCACGGAAGAGGGTATCGACGTTCAAGATTGTAGATCTATAATTCGTTTTGATTTGCCAAGTTCTGTTCGCAGCTATATTCAGTCTCGTGGACGAGCTCGTCGACCTGAGTCGGATTATATTGTACTTCTTGAGAGGAGCAATGAGAAACAACTGAACCTGTTTTATAATGTAATAAGGAGTGAAAATTCGATGAGAAATTTATCCTTGAATAGAAGCCACATTTCTTTAACTCCAAAGGCTAGCGTTGCAAAAGAACCGGCTCTATATAGTGTGTCACGAACTGGTGCCTCAGTTAATTGTGACTCCAGTGTCAGTTTTATCTACAAATATTGTTCAAAGTTGCCCGGAGACAAGTACTATTTGCCACGACCAGAATTTGTGTTCAGGTCCGTTG

Fln Alignment:

AllPine_a_c43344___TLDLFRXXXXXXXXXXXXXXXXIDVQDCRSIIRFDLPSSVRSYIQSRGRARRPESDYIVLLERSNEKQLNLFYNVIRSENSMRNLSLNRSHISLTPKASVAKEPALYSVSRTGASVNCDSSVSFIYKYCSKLPGDKYYLPRPEFVF
Q5N870________________TLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVPNEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain