SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene109798

Length: 443 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene109798
CCCAGTTCGAGCAGGCCTATCTCGACTCTCTGCCTTCTGCTCACATGTATGAGAAAAGTTACATGCATCGTGATGTGGTCACTCATGTTGCAGTCTCAGCAGCAGACTTCTTTATAACAGGCAGCTCTGATGGTCATTTGAAATTTTGGAAAAAGAAGCCGTCAGGCATTGAATTTGTGAAGCATTTCCGATCTCATCTTGATCCTATTGAAGGCTTAGCTGTTAGTGCAGATGGTTTACTTTGTTGCACAATTTCTAATGACCGGGCTGCGAAGATTTATGACGTGGTCAACTATGATATGATGGTAATGATCCGATTGCCTTTTATTCCGGGCACTATAGAATGGGTATTCAAACAAGGAGATGTTAAACCAAAGCTTGCAATCAGTGATCGGAATTCGCCTGATGTCCATATTTATGATGCACGTGCTGATAGCAGTGAG

Ace file of the UniGene sp_v3.0_unigene109798 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	5.0e-18	32%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	84%
Sma3	Peptidyl-prolyl cis-trans isomerase, cyclophilin-type	-	-	5.926e-07	-

Source	Gene names
Sma3	At3g44600; At3g44600/F14L2_150; CHLREDRAFT_30209; CYN71; CypY; F14L2_150; GSVIVT00022051001; MICPUCDRAFT_36146; MICPUN_98423; OJ1150_A11.24-1; OSTLU_40159; OsI_30243; OsJ_28259; Ot01g05300; PHYPADRAFT_85118; POPTRDRAFT_721509; RCOM_0792840;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	histone binding	GO:0042393	Molecular Function	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-
Sma3	meristem structural organization	GO:0009933	Biological Process	-
Sma3	regulation of root meristem growth	GO:0010082	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	leaf formation	GO:0010338	Biological Process	-
Sma3	leaf shaping	GO:0010358	Biological Process	-
Sma3	regulation of histone methylation	GO:0031060	Biological Process	-
Sma3	carpel development	GO:0048440	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	sepal formation	GO:0048453	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G44600.1	CYP71 cyclophilin71 chr3:16165368-16169201 REVERSE LENGTH=631	82%
RefSeq	Arabidopsis thaliana	NP_190046.2	peptidylprolyl isomerase domain and WD repeat-containing protein 1 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002312902.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1M4F0

Fln msg: Distance to subject end: 359 aas, your sequence is shorter than subject: 147 - 538

Fln protein: QFEQAYLDSLPSAHMYEKSYMHRDVVTHVAVSAADFFITGSSDGHLKFWKKKPSGIEFVKHFRSHLDPIEGLAVSADGLLCCTISNDRAAKIYDVVNYDMMVMIRLPFIPGTIEWVFKQGDVKPKLAISDRNSPDVHIYDARADSSE

Protein Length: 148

Fln nts: CCCAGTTCGAGCAGGCCTATCTCGACTCTCTGCCTTCTGCTCACATGTATGAGAAAAGTTACATGCATCGTGATGTGGTCACTCATGTTGCAGTCTCAGCAGCAGACTTCTTTATAACAGGCAGCTCTGATGGTCATTTGAAATTTTGGAAAAAGAAGCCGTCAGGCATTGAATTTGTGAAGCATTTCCGATCTCATCTTGATCCTATTGAAGGCTTAGCTGTTAGTGCAGATGGTTTACTTTGTTGCACAATTTCTAATGACCGGGCTGCGAAGATTTATGACGTGGTCAACTATGATATGATGGTAATGATCCGATTGCCTTTTATTCCGGGCACTATAGAATGGGTATTCAAACAAGGAGATGTTAAACCAAAGCTTGCAATCAGTGATCGGAATTCGCCTGATGTCCATATTTATGATGCACGTGCTGATAGCAGTGAG

Fln Alignment:

AllPine_a_c43176___QFEQAYLDSLPSAHMYEKSYMHRDVVTHVAVSAADFFITGSSDGHLKFWKKKPSGIEFVKHFRSHLDPIEGLAVSADGLLCCTISNDRAAKIYDVVNYDMMVMIRLPFIPGTIEWVFKQGDVKPKLAISDRNSPDVHIYDARADSSE
I1M4F0________________QFEHAYLDVLPSANMYEKSYMHRDVVTHVAVSAADFFITGSADGHLKFWKKKPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDRSVKIYDVVNFDMMVMIRLPYIPGAVDWVYKQGDVKARLAISDRNSSFVHIYDARAGSND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain