SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene109770

Length: 378 nt

UniGene Fasta

>sp_v3.0_unigene109770
TTGAGTTTGGGAAAGGATGTGATTTGATCACCGAACATCTCCAAATGCACACAGAATTGCAAGTCATAACCAGGCTTTATAAATATCTTCATCGATTCCGCTGGAAGCCCACTGACAGTAACCCTGTTAAAATTTGGATTCCACGTGATGGTGGACTTGGGGGTGAATGGAAAGATTCAAAACTGTGTGCAGTACATGATGACAATGGCCTATTTCACAATAGCTTAGAAATCCTGGATAACCTCTATGAAGAAGCATTACTTCCTTTCTTTTCTAGTTATCTTGGTGTAGCACTGCATCCCACAATTGAAGATTATTGCAGCCTGTGGCTAAATTGGGTATCCACTGGTCATCAAGTTTCCGCAGGGGAGTGCTGCT

Ace file of the UniGene sp_v3.0_unigene109770

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RA95_RICCO	-	-	4.0e-26	43%
FL-Next	tr=DNA binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	43%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002322285.1	predicted protein [Populus trichocarpa]	6.0e-30	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RA95

Fln msg: Distance to subject end: 275 aas, your sequence is shorter than subject: 125 - 2299

Fln protein: EFGKGCDLITEHLQMHTELQVITRLYKYLHRFRWKPTDSNPVKIWIPRDGGLGGEWKDSKLCAVHDDNGLFHNSLEILDNLYEEALLPFFSSYLGVALHPTIEDYCSLWLNWVSTGHQVSAGECC

Protein Length: 126

Fln nts: TTGAGTTTGGGAAAGGATGTGATTTGATCACCGAACATCTCCAAATGCACACAGAATTGCAAGTCATAACCAGGCTTTATAAATATCTTCATCGATTCCGCTGGAAGCCCACTGACAGTAACCCTGTTAAAATTTGGATTCCACGTGATGGTGGACTTGGGGGTGAATGGAAAGATTCAAAACTGTGTGCAGTACATGATGACAATGGCCTATTTCACAATAGCTTAGAAATCCTGGATAACCTCTATGAAGAAGCATTACTTCCTTTCTTTTCTAGTTATCTTGGTGTAGCACTGCATCCCACAATTGAAGATTATTGCAGCCTGTGGCTAAATTGGGTATCCACTGGTCATCAAGTTTCCGCAGGGGAGTGCTGCT

Fln Alignment:

AllPine_a_c43140___EFGKGCDLITEHLQMHTELQVITRLYKYLHRFRWKPTDSNPVKIWIPRDGGLGGEWKDSKLCAVHDDNGLFHNSLEILDNLYEEALLPFFSSYLGVALHPTIEDYCSLWLNWVSTGHQVSAGECC
B9RA95________________ELEKGCSLLASHLVSHSEFATILRIYEFLIQYKWKPGSTTTDLIWIPF-GNEDGKWVNPGACALHDKDNLFGLLLNVLEKHYQPRLLNFFSSEFGVKSNPSIDDYCKLWKTWENTGHQLTHAACC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain