SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene109606

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene109606
GGAGTATCCAGAAATGTCGCTGAGTGTATGCAAAGACTCGGAGTTAAGCCCTTTATCATCAGTGTCGTTGGAGAAGACATGGCAGGAAAAACATTGCTTGACAACTGTAAGTCCCTTGGTTTGTCCATAGATGGAATCCGCAAGTGTAAGAATGTAGCAACCCCTGTTGTATCAAACATATATGACAGTGCAGGAGAAATAGCATCCGCTGTTGCAGACGTGCAGGCAGTTGA

Ace file of the UniGene sp_v3.0_unigene109606

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RZB6_RICCO	-	-	2.0e-18	55%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	60%

Source	Gene names
Sma3	GSVIVT00035982001; MtrDRAFT_AC147481g10v2; OJ1111_A10.13; Os05g0185700; OsI_18736; OsJ_17378; PHYPADRAFT_214732; POPTRDRAFT_195347; RCOM_0937540;

Source	GOs	Term	Type	e value	Identity
Sma3	ribokinase activity	GO:0004747	Molecular Function	0.0	-
Sma3	D-ribose metabolic process	GO:0006014	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribokinase	IPR002139	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	MaoC-like dehydratase	IPR002539	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G49350.1	pfkB-like carbohydrate kinase family protein chr1:18265070-18267034 FORWARD LENGTH=378	5.0e-15	45%
RefSeq	Arabidopsis thaliana	NP_564543.1	pfkB-type carbohydrate kinase-like protein [Arabidopsis thaliana]	6.0e-15	45%
RefSeq	Populus trichocarpa	XP_002306090.1	predicted protein, partial [Populus trichocarpa]	1.0e-22	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1NDC8

Fln msg: Distance to subject end: 263 aas, your sequence is shorter than subject: 77 - 382

Fln protein: GVSRNVAECMQRLGVKPFIISVVGEDMAGKTLLDNCKSLGLSIDGIRKCKNVATPVVSNIYDSAGEIASAVADVQAV

Protein Length: 78

Fln nts: GGAGTATCCAGAAATGTCGCTGAGTGTATGCAAAGACTCGGAGTTAAGCCCTTTATCATCAGTGTCGTTGGAGAAGACATGGCAGGAAAAACATTGCTTGACAACTGTAAGTCCCTTGGTTTGTCCATAGATGGAATCCGCAAGTGTAAGAATGTAGCAACCCCTGTTGTATCAAACATATATGACAGTGCAGGAGAAATAGCATCCGCTGTTGCAGACGTGCAGGCAGTTGA

Fln Alignment:

AllPine_a_c42934___GVSRNVAECMQRLGVKPFIISVVGEDMAGKTLLDNCKSLGLSIDGIRKCKNVATPVVSNIYDSAGEIASAVADVQA
I1NDC8________________GVARNVAECMSKLGAKPYMISALGFDMAGNLLLNQWKSAGLSIEGILKDKDIETPVVCNIFDVNGEVAAGVASVEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain