SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene109489

Length: 466 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene109489
ACGGTCAGACTCAGTGATGTGGATTTGGCATCCAGGAGAGCCGAAGAAGCAGCGTCTCGAAGATACCAGGCCGCAGGATGGGCTGAGGAAGATGGTTGGAGTGGTTGCGTCGAGGGATTTGCCGAACGAGCCGTCGGAGGAGGAATTTCGCCTTGGCTTGCGAAATGGAATCCTTCTATGCAATGTTATCAACAAAGTTCATCCAGGTTCTGTTCCAAAGGTGGTGGAGAGTCCGGCTCCTGCATTACCTTCTTCTGACGGAGCGCCTCTCTTGGCTTATCAGTATTTTGAAAATGTGAGGAACTTCCTTGTTGCAGTTCAAGAACTGAACCTCCCAACCTTTGAAGCGTCTGATTTGGAAAAGGGAGGATCGTCGGCGAAAGTTGTGAACTGCATTTTAGCTTTGAAATCATACAGTGATTGGAAGCAAACTGGTGGAAATGGTTTTTGGAAGTATGGCGGTAAC

Ace file of the UniGene sp_v3.0_unigene109489 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin-related protein [Gossypium hirsutum]	-	-	0.0	74%
FL-Next	sp=Kinesin-4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	Kinesin heavy chain, putative	-	-	3.552e-12	-

Source	Gene names
Sma3	ATK4; At2g47500; At3g10310; At5g27000; F14P13.9; F2P16.12; GSVIVT00022657001; GSVIVT00025619001; GSVIVT00028054001; GSVIVT00033442001; KATD; KCH1; KP1; LOC_Os03g18980; LOC_Os12g36100; OSIGBa0128P10.5; OSJNBa0016O02.10; Os11g0672400; Os12g0547500; OsI_0303

Source	GOs	Term	Type	Identity
Sma3	nuclear chromosome, telomeric region	GO:0000784	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	telomere maintenance	GO:0000723	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Telomere end binding protein	IPR011564	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G47500.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain chr2:19493247-19497882 FORWARD LENGTH=983	68%
RefSeq	Arabidopsis thaliana	NP_850475.2	putative kinesin heavy chain [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002320328.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O81635

Fln msg: Distance to subject end: 809 aas, your sequence is shorter than subject: 155 - 987

Fln protein: RSDSVMWIWHPGEPKKQRLEDTRPQDGLRKMVGVVASRDLPNEPSEEEFRLGLRNGILLCNVINKVHPGSVPKVVESPAPALPSSDGAPLLAYQYFENVRNFLVAVQELNLPTFEASDLEKGGSSAKVVNCILALKSYSDWKQTGGNGFWKYGGN

Protein Length: 156

Fln nts: ACGGTCAGACTCAGTGATGTGGATTTGGCATCCAGGAGAGCCGAAGAAGCAGCGTCTCGAAGATACCAGGCCGCAGGATGGGCTGAGGAAGATGGTTGGAGTGGTTGCGTCGAGGGATTTGCCGAACGAGCCGTCGGAGGAGGAATTTCGCCTTGGCTTGCGAAATGGAATCCTTCTATGCAATGTTATCAACAAAGTTCATCCAGGTTCTGTTCCAAAGGTGGTGGAGAGTCCGGCTCCTGCATTACCTTCTTCTGACGGAGCGCCTCTCTTGGCTTATCAGTATTTTGAAAATGTGAGGAACTTCCTTGTTGCAGTTCAAGAACTGAACCTCCCAACCTTTGAAGCGTCTGATTTGGAAAAGGGAGGATCGTCGGCGAAAGTTGTGAACTGCATTTTAGCTTTGAAATCATACAGTGATTGGAAGCAAACTGGTGGAAATGGTTTTTGGAAGTATGGCGGTAAC

Fln Alignment:

AllPine_a_c42792___LRKMVGVVASRDLPNEPSEEEFRLGLRNGILLCNVINKVHPGSVPKVVESPAPALPSSDGAPLLAYQYFENVRNFLVAVQELNLPTFEASDLEKGGSSAKVVNCILALKSYSDWKQTGGNGFWKYGGN
O81635________________LRDMIGVSNGKDFPGEPSEEEFRLGLRSGIVLCNVLNKVNPGSVSKVVEAPDDV---ADGAALSAFQYFENIRNFLVAIEEMGLPSFEASDMEKGGKSIRIVNCILALKSYSEWKLKGENGPWRYGSN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
108		33		66	0.997452
112	75			25	0.996486

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain