SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene109482

Length: 464 nt

UniGene Fasta

>sp_v3.0_unigene109482
ATCTCGTTGCCAGCGATTTTGGCAACCTCGATCGCCATCTGCCCGCTGCAGTTGTGCATCCCGGGTCTGTGACAGACATAGCGAAGCTGGTGAAGTCAGTTTATGAGCTGAGCCCTTATTCTGGTCTCACCGTTGCTGCCAGAGGCCACGGGCACTCGATACACGGCCAGGCGCAAGCTCTGAATGGCGTGGTCATAGAGATGAGGACTCTCAGAGGCATCCACGTTGACAGAGACAACGCCTACGTTGATGTGAGAGGGGGCGAGCTCTGGATCGACGTATTGCATGCAACGCTCAGGGAAGGGCTAGCCCCCAAGTCCTGGACAGATTACCTGTATCTCAGCGTGGGAGGGACCCTGTCCAATGGTGGGATCAGTGGTCAGGCCTTCCAACATGGCCCTCAGATTAGCAACGTGCAGCAGCTCGAAGTGGTTACAGGAAAAGGCGAGATATTGAACTGCTCC

Ace file of the UniGene sp_v3.0_unigene109482

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytokinin dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RGG6_RICCO	-	-	0.0	64%
FL-Next	sp=Cytokinin dehydrogenase 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Sma3	Cytokinin oxidase	-	-	3.54e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cytokinin dehydrogenase.	EC:1.5.99.12	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Zeatin biosynthesis	00908		0.0	%

Source	Gene names
Sma3	At1g75450; At2g19500; At2g41510; At3g63440; At4g29740; At5g21482; At5g56970; B1046G12.8; B1131G07.3; B1131G07.5; B1150F11.25; BoCKX1; BrCKX1; CKX; CKX1; CKX10; CKX2; CKX3; CKX4; CKX5; CKX6; CKX7; F13M11.?; F1B16.2; F3P11.10; GSVIVT00013006001; GSVIVT00014

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	primary amine oxidase activity	GO:0008131	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	cytokinin dehydrogenase activity	GO:0019139	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	cytokinin metabolic process	GO:0009690	Biological Process	-
Sma3	cytokinin catabolic process	GO:0009823	Biological Process	-
Sma3	inflorescence development	GO:0010229	Biological Process	-
Sma3	meristem development	GO:0048507	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxygen oxidoreductase covalent FAD-binding site	IPR006093	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	Cytokinin dehydrogenase 1, FAD/cytokinin binding domain	IPR015345	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-binding, type 2, subdomain 1	IPR016167	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G63440.1	ATCKX6, CKX6, ATCKX7 cytokinin oxidase/dehydrogenase 6 chr3:23424291-23426265 FORWARD LENGTH=533	61%
RefSeq	Arabidopsis thaliana	NP_191903.3	cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002304773.1	cytokinin oxidase [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LY71

Fln msg: Distance to subject end: 316 aas, your sequence is shorter than subject: 154 - 533

Fln protein: LVASDFGNLDRHLPAAVVHPGSVTDIAKLVKSVYELSPYSGLTVAARGHGHSIHGQAQALNGVVIEMRTLRGIHVDRDNAYVDVRGGELWIDVLHATLREGLAPKSWTDYLYLSVGGTLSNGGISGQAFQHGPQISNVQQLEVVTGKGEILNCS

Protein Length: 155

Fln nts: ATCTCGTTGCCAGCGATTTTGGCAACCTCGATCGCCATCTGCCCGCTGCAGTTGTGCATCCCGGGTCTGTGACAGACATAGCGAAGCTGGTGAAGTCAGTTTATGAGCTGAGCCCTTATTCTGGTCTCACCGTTGCTGCCAGAGGCCACGGGCACTCGATACACGGCCAGGCGCAAGCTCTGAATGGCGTGGTCATAGAGATGAGGACTCTCAGAGGCATCCACGTTGACAGAGACAACGCCTACGTTGATGTGAGAGGGGGCGAGCTCTGGATCGACGTATTGCATGCAACGCTCAGGGAAGGGCTAGCCCCCAAGTCCTGGACAGATTACCTGTATCTCAGCGTGGGAGGGACCCTGTCCAATGGTGGGATCAGTGGTCAGGCCTTCCAACATGGCCCTCAGATTAGCAACGTGCAGCAGCTCGAAGTGGTTACAGGAAAAGGCGAGATATTGAACTGCTCC

Fln Alignment:

AllPine_a_c42785___ASDFGNLDRHLPAAVVHPGSVTDIAKLVKSVYELSPYSGLTVAARGHGHSIHGQAQALNGVVIEMRTLRG-----IHVDRDNAYVDVRGGELWIDVLHATLREGLAPKSWTDYLYLSVGGTLSNGGISGQAFQHGPQISNVQQLEVVTGKGEILNCS
Q9LY71________________SKDFGNRYQLIPLAVLHPKSVSDIASTIRHIWMMGTHSQLTVAARGRGHSLQGQAQTRHGIVIHMESLHPQKLQVYSVDSPAPYVDVSGGELWINILHETLKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVHQLEIVTGKGEILNCT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
125			50	50	1.0
132	50		50		1.0
136		66		33	0.997452
178		75		25	0.996473
199	75		25		0.996473
211		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain