SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene109030

Length: 147 nt

UniGene Fasta

>sp_v3.0_unigene109030
GGGATAGTCGCCCTAATAAAAAACAGAACCGATGATATGACACTGGCCATTGGTGATGGAGCAAATGATGTTTCTATGCTCCAGATGGCAGACGTTGGAGTAGGAATAAGTGGCCAAGAAGGCAGGCAAGCTGTAATGGCATCAGAT

Ace file of the UniGene sp_v3.0_unigene109030

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATPase [Arabidopsis thaliana]	-	-	4.0e-18	93%
FL-Next	sp=Phospholipid-transporting ATPase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	93%
Sma3	Aminophospholipid ATPase	-	-	1.155e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	0.0	-

Source	Gene names
Sma3	ALA1; ALA10; ALA11; ALA12; ALA2; ALA4; ALA5; ALA6; ALA7; ALA8; ALA9; At1g13210; At1g17500; At1g26130; At1g54280; At1g68710; At1g72700; At3g13900; At3g25610; At3g27870; At5g04930; CHLREDRAFT_172401; CHLREDRAFT_190292; F14G11.10; F1L3.21; F20D21.10; F24J5.6

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	phospholipid transport	GO:0015914	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G04930.1	ALA1 aminophospholipid ATPase 1 chr5:1445509-1449568 FORWARD LENGTH=1158	2.0e-23	93%
RefSeq	Arabidopsis thaliana	NP_568146.1	phospholipid-transporting ATPase 1 [Arabidopsis thaliana]	2.0e-23	93%
RefSeq	Populus trichocarpa	XP_002323676.1	aminophospholipid ATPase, partial [Populus trichocarpa]	3.0e-22	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P98204

Fln msg: Distance to subject end: 269 aas, your sequence is shorter than subject: 49 - 1158

Fln protein: GIVALIKNRTDDMTLAIGDGANDVSMLQMADVGVGISGQEGRQAVMASD

Protein Length: 50

Fln nts: GGGATAGTCGCCCTAATAAAAAACAGAACCGATGATATGACACTGGCCATTGGTGATGGAGCAAATGATGTTTCTATGCTCCAGATGGCAGACGTTGGAGTAGGAATAAGTGGCCAAGAAGGCAGGCAAGCTGTAATGGCATCAGAT

Fln Alignment:

AllPine_a_c42200___GIVALIKNRTDDMTLAIGDGANDVSMLQMADVGVGISGQEGRQAVMASD
P98204________________GIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain