SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108984

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene108984
GCTCCCATCCCCAATCTCGTCATAACAAAAGCCAATGTGCTCGAAGTTTACATGTTAGAGTCCACAAAGACAACAAGAGGTCCGCTCTCGAGGCTACTGCTCCTAAACGCGGTTCGACAATGGCCGGCCTCTGTGGTGCTTGGCTCGAACTTGCTTGCCATTACACATTGCATGAGAATGTAGAAAGCATGGCAATTCTATCTCCCGGGCATGATGGGCATGATGATGGACTTAAAAAAGAGATGCTATTATTTTGTCATTTCGAGATGCGAAAATATCAGTGTTGGAGTTTGATGATTCAATCCACGGCCTATGCACCAGCTCATTGCATTATTTTGAAGGACACGATTGGCAGCATTTGAAAAGGGGTAGAGAAAAATTTGCAAGAGGGCCATTAGTGCAGTCAAGAACCCCCAGGGGAGGT

Ace file of the UniGene sp_v3.0_unigene108984 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cleavage and polyadenylation specificity factor subunit [Arabidopsis thaliana]	-	-	2.0e-28	76%
FL-Next	sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Sma3	Probable cleavage and polyadenylation specificity factor subunit 1	-	-	7.054e-10	-

Source	Gene names
Sma3	At5g51660; GSVIVT00038486001; K17N15.21; LOC_Os04g18010; OSJNBa0032B23.5; Os04g0252200; OsI_15095; OsJ_14038; PHYPADRAFT_57317; POPTRDRAFT_422815; RCOM_1498840;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	0.0	-
Sma3	TonB box, conserved site	IPR010916	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51660.1	CPSF160, ATCPSF160 cleavage and polyadenylation specificity factor 160 chr5:20980250-20989268 FORWARD LENGTH=1442	2.0e-30	76%
RefSeq	Arabidopsis thaliana	NP_199979.2	cleavage and polyadenylation specificity factor subunit 1 [Arabidopsis thaliana]	3.0e-30	76%
RefSeq	Populus trichocarpa	XP_002318462.1	predicted protein, partial [Populus trichocarpa]	5.0e-32	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FGR0

Fln msg: Separated hits, possible frame ERROR between 63 and 105, and overlapping frame ERROR between 254 and 239, Distance to subject end: 1248 aas, your sequence is shorter than subject: 142 - 1442

Fln protein: APIPNLVITKANVLEVYMLExxxxxxxxxxxxxxxKRGSTMAGLCGAWLELACHYTLHENVESMAILSPGHDGHDDGLxxxxxxxxSFRDAKISVLEFDDSIHGLCTSSLHYFEGHDWQHLKRGREKFARGPLVQSRTPRGG

Protein Length: 143

Fln nts: GCTCCCATCCCCAATCTCGTCATAACAAAAGCCAATGTGCTCGAAGTTTACATGTTAGAGTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAAACGCGGTTCGACAATGGCCGGCCTCTGTGGTGCTTGGCTCGAACTTGCTTGCCATTACACATTGCATGAGAATGTAGAAAGCATGGCAATTCTATCTCCCGGGCATGATGGGCATGATGATGGACTTAAxxxxxxxxxxxxxxxxxxxxxGTCATTTCGAGATGCGAAAATATCAGTGTTGGAGTTTGATGATTCAATCCACGGCCTATGCACCAGCTCATTGCATTATTTTGAAGGACACGATTGGCAGCATTTGAAAAGGGGTAGAGAAAAATTTGCAAGAGGGCCATTAGTGCAGTCAAGAACCCCCAGGGGAGGT

Fln Alignment:

AllPine_a_c42145___PIPNLVITKANVLEVYMLESxxxxxxxxxxxxxxKRGSTMAGLCGAWLELACHYTLHENVESMAILSPGHDGHDDGxxxxxxxxRDAKISVLEFDDSIHGLCTSSLHYFEGHDWQHLKRGREKFARGPLVQ
Q9FGR0________________PLPNVVITAANILEVYIVRAxxxxxxxxxxxxxxKRGGVMDGVYGVSLELVCHYRLHGNVESIAVLPMGGGNSSKGxxxxxxxxRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRESFPRGPLVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain