SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108915

Length: 426 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene108915
TTATGGAAACAGGGAATTTCCACAGACCGTATTCTTGATTTACGCTGATTATTAGCTGTGAATGTGGAGACATGCCATCTGACCAACTATTTTTTATCCCATGAGGTAAGAAAATCAGTAGTTCAGAAGCTCATTAAATAATGGGATAGTTTGACAGGCTGGTGGATTGCAATTGACCGGTTCTGTTCAAGATATCATGTGGTATGGCCCTACTTGCATTAACAACATAGGTGTTCGTGTCAAGATAGAAATAGCCATGTACAGTGAAACTGGTTCTATTATTAGTTTGTAAAGCTTAAGTGTGGCCCGGATTCAATAAAGAAGTTTCAACATAATTCGCAGGAAGCAGACCTATTAAAGAAACTAAATCACAAAAAGCAGAACTAATTCAGAAGCCTAAATTCACAAGAAGCAGACCTAATTTAG

Ace file of the UniGene sp_v3.0_unigene108915 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat (TPR)-containing protein-like [Oryza sativa Japonica Group] dbj\|BAD27948.1\| tetratricopeptide repeat (TPR)-containing protein-like [Oryza sativa Japonica Group]	-	-	1.0e-07	62%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	82%

Source	Gene names
Sma3	GSVIVT00000280001; GSVIVT00017134001; OSJNBa0070O11.2; Os04g0645100; OsI_17662; OsJ_16398; POPTRDRAFT_779528; RCOM_0901420; RCOM_1404940; VITISV_008490;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9RVA5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 82 aas, putative chimeric sequence, your sequence is shorter than subject: 47 - 169

Fln protein: LWKQGISTDRILDLR*LLAVNVETCHLTNYFLSHEVRKSVVQKLIK*

Protein Length: 48

Fln nts: TTATGGAAACAGGGAATTTCCACAGACCGTATTCTTGATTTACGCTGATTATTAGCTGTGAATGTGGAGACATGCCATCTGACCAACTATTTTTTATCCCATGAGGTAAGAAAATCAGTAGTTCAGAAGCTCATTAAATAA___TGGGATAGTTTGACAGGCTGGTGGATTGCAATTGACCGGTTCTGTTCAAGATATCATGTGGTATGGCCCTACTTGCATTAACAACATAGGTGTTCGTGTCAAGATAGAAATAGCCATGTACAGTGAAACTGGTTCTATTATTAGTTTGTAAAGCTTAAGTGTGGCCCGGATTCAATAAAGAAGTTTCAACATAATTCGCAGGAAGCAGACCTATTAAAGAAACTAAATCACAAAAAGCAGAACTAATTCAGAAGCCTAAATTCACAAGAAGCAGACCTAATTTAG

Fln Alignment:

AllPine_a_c42062___QGISTDRILDLR*LLAVNVETCHLTNYFLSHEVR
B9RVA5________________KGISTDRILDVKKLLAVNVETCHLTNYSLSHEVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain